[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5016	8144982	NM_182795	NPM2		nucleophosmin/nucleoplasmin 2

Fetching correlation data, please wait...
Getting list of correlations for id 5016.
Getting list of p-values for id 5016.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8144982	8031499	AF086519	SSC5D	0.749878	3.435715e-20	5.953064e-16	5.953064e-16
2	8144982	8162472	NM_021570	BARX1	0.731170	8.308715e-19	1.439651e-14	7.198256e-15
3	8144982	8075934	NM_014550	CARD10	0.727444	1.518306e-18	2.630769e-14	8.769230e-15
4	8144982	8149652	NM_005144	HR	0.727414	1.525618e-18	2.643437e-14	6.608594e-15
5	8144982	8025041	NM_139161	CRB3	0.725040	2.228415e-18	3.861174e-14	7.722349e-15
6	8144982	8079305	NM_003278	CLEC3B	0.718789	5.931825e-18	1.027807e-13	1.713012e-14
7	8144982	8032197	NM_152769	C19orf26	0.715441	9.914276e-18	1.717847e-13	2.454067e-14
8	8144982	8153101	NM_152888	COL22A1	0.713960	1.241447e-17	2.151055e-13	2.688818e-14
9	8144982	7998643	NM_005061	RPL3L	0.713830	1.266002e-17	2.193602e-13	2.437336e-14
10	8144982	8032088	NM_214710	PRSSL1	0.708506	2.807170e-17	4.863984e-13	4.863984e-14
11	8144982	8028084	NM_001024807	APLP1	0.703678	5.692247e-17	9.862957e-13	8.966324e-14
12	8144982	7992049	NM_207112	HAGHL	0.700673	8.775631e-17	1.520554e-12	1.267128e-13
13	8144982	8005328	NM_016239	MYO15A	0.700576	8.897166e-17	1.541612e-12	1.185855e-13
14	8144982	8143941	NM_198285	WDR86	0.699891	9.812344e-17	1.700185e-12	1.214418e-13
15	8144982	8133704	NM_001110199	SRRM3	0.699732	1.003798e-16	1.739281e-12	1.159520e-13
16	8144982	8075200	NM_012265	RHBDD3	0.699040	1.107633e-16	1.919195e-12	1.199497e-13
17	8144982	8042896	NM_016170	TLX2	0.696554	1.574515e-16	2.728163e-12	1.604802e-13
18	8144982	8071989	NM_004076	CRYBB3	0.696286	1.635146e-16	2.833218e-12	1.574010e-13
19	8144982	8170786	AF514420	LCA10	0.695721	1.770023e-16	3.066918e-12	1.614167e-13
20	8144982	7955578	NM_181711	GRASP	0.695486	1.829348e-16	3.169711e-12	1.584855e-13
21	8144982	8159670	NM_006647	NOXA1	0.694794	2.015369e-16	3.492031e-12	1.662872e-13
22	8144982	8159734	NM_000718	CACNA1B	0.691064	3.380681e-16	5.857707e-12	2.662594e-13
23	8144982	7994260	NM_006040	HS3ST4	0.690925	3.446068e-16	5.971002e-12	2.596088e-13
24	8144982	8137133	NM_032534	KRBA1	0.690847	3.483203e-16	6.035346e-12	2.514728e-13
25	8144982	7896761	NM_152486	SAMD11	0.690208	3.802840e-16	6.589181e-12	2.635673e-13
26	8144982	8086985	NM_000094	COL7A1	0.688799	4.611004e-16	7.989487e-12	3.072880e-13
27	8144982	7911506	NM_004421	DVL1	0.688622	4.723270e-16	8.184009e-12	3.031115e-13
28	8144982	7921936	NM_177398	LMX1A	0.688547	4.771983e-16	8.268415e-12	2.953005e-13
29	8144982	8000467	NM_001109763	GSG1L	0.688124	5.055151e-16	8.759060e-12	3.020366e-13
30	8144982	8116033	NM_000505	F12	0.687413	5.567297e-16	9.646455e-12	3.215485e-13
31	8144982	8104122	NM_033178	DUX4	0.686814	6.038252e-16	1.046248e-11	3.374993e-13
32	8144982	7937200	NM_015722	CALY	0.685816	6.908767e-16	1.197082e-11	3.740881e-13
33	8144982	7911376	NM_001142467	HES4	0.685741	6.979050e-16	1.209260e-11	3.664424e-13
34	8144982	8052932			0.685501	7.208901e-16	1.249086e-11	3.673783e-13
35	8144982	8012344	NM_032580	HES7	0.685466	7.242696e-16	1.254942e-11	3.585548e-13
36	8144982	8064242	NR_027686	NCRNA00176	0.685397	7.310435e-16	1.266679e-11	3.518553e-13
37	8144982	7973468	NM_138360	LRRC16B	0.684628	8.106134e-16	1.404550e-11	3.796081e-13
38	8144982	8024655	NM_001135580	C19orf71	0.684463	8.286779e-16	1.435850e-11	3.778553e-13
39	8144982	8170753	NM_014370	SRPK3	0.684388	8.371008e-16	1.450445e-11	3.719089e-13
40	8144982	7998136	NM_022450	RHBDF1	0.684150	8.642357e-16	1.497461e-11	3.743653e-13
41	8144982	7949843	NM_016366	CABP2	0.684057	8.749656e-16	1.516053e-11	3.697690e-13
42	8144982	8049239	AY358535	C2orf82	0.683990	8.828481e-16	1.529711e-11	3.642169e-13
43	8144982	8032094	NM_024888	LPPR3	0.683260	9.733591e-16	1.686539e-11	3.922184e-13
44	8144982	8079966	NM_004636	SEMA3B	0.682495	1.077708e-15	1.867344e-11	4.243964e-13
45	8144982	8037788	NM_145056	DACT3	0.682015	1.148666e-15	1.990294e-11	4.422876e-13
46	8144982	8142971	NM_138693	KLF14	0.681959	1.157358e-15	2.005354e-11	4.359464e-13
47	8144982	7928291	NM_004273	CHST3	0.681014	1.311635e-15	2.272670e-11	4.835467e-13
48	8144982	7922108	NM_153832	GPR161	0.680946	1.323543e-15	2.293303e-11	4.777714e-13
49	8144982	8010287	NM_030968	C1QTNF1	0.680467	1.409971e-15	2.443058e-11	4.985832e-13
50	8144982	8121209	NM_005604	POU3F2	0.680351	1.431651e-15	2.480621e-11	4.961242e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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