[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 10 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
13329	7998117	NM_207366	SEPT14		septin 14
13505	7896742	NM_207366	SEPT14		septin 14
13506	7911347	NM_207366	SEPT14		septin 14
13507	7945342	NM_207366	SEPT14		septin 14
13508	8031990	NM_207366	SEPT14		septin 14
13509	8085054	NM_207366	SEPT14		septin 14
13510	8110670	NM_207366	SEPT14		septin 14
13511	8137666	NM_207366	SEPT14		septin 14
13512	8148964	NM_207366	SEPT14		septin 14
14798	7911329	NM_207366	SEPT14		septin 14

Fetching correlation data, please wait...
Getting list of correlations for id 13329.
Getting list of p-values for id 13329.
1 of 10 done.
Getting list of correlations for id 13505.
Getting list of p-values for id 13505.
2 of 10 done.
Getting list of correlations for id 13506.
Getting list of p-values for id 13506.
3 of 10 done.
Getting list of correlations for id 13507.
Getting list of p-values for id 13507.
4 of 10 done.
Getting list of correlations for id 13508.
Getting list of p-values for id 13508.
5 of 10 done.
Getting list of correlations for id 13509.
Getting list of p-values for id 13509.
6 of 10 done.
Getting list of correlations for id 13510.
Getting list of p-values for id 13510.
7 of 10 done.
Getting list of correlations for id 13511.
Getting list of p-values for id 13511.
8 of 10 done.
Getting list of correlations for id 13512.
Getting list of p-values for id 13512.
9 of 10 done.
Getting list of correlations for id 14798.
Getting list of p-values for id 14798.
10 of 10 done.
Calculating corrections for multiple testing (n=173270), please wait...
Done; whole program took 1.040 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7945342	7896742	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8031990	7896742	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7911347	8110670	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	7911347	8137666	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	7911347	8148964	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8085054	7896742	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8085054	7911347	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
8	8085054	7945342	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
9	8085054	8031990	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
10	8085054	8110670	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
11	8085054	8137666	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
12	7945342	7911347	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
13	8085054	8148964	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
14	8031990	7911347	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
15	7911347	8031990	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
16	7896742	7911347	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
17	7896742	7945342	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
18	7896742	8031990	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
19	7896742	8085054	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
20	7896742	8110670	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
21	7896742	8137666	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
22	7896742	8148964	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
23	8031990	7945342	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
24	8031990	8085054	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
25	8031990	8110670	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
26	8031990	8137666	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
27	7911347	8085054	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
28	7945342	8148964	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
29	7911347	7945342	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
30	7911347	7896742	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
31	8110670	7896742	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
32	8110670	7911347	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
33	7945342	8031990	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
34	8110670	7945342	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
35	7945342	8085054	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
36	8110670	8031990	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
37	8110670	8085054	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
38	8110670	8137666	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
39	8148964	8137666	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
40	7945342	8110670	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
41	8148964	8110670	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
42	8148964	8085054	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
43	8148964	8031990	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
44	8148964	7945342	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
45	8148964	7911347	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
46	8137666	8031990	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
47	8137666	7896742	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
48	8137666	7911347	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
49	7945342	8137666	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
50	8137666	7945342	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation