[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13511.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13511	8137666	NM_207366	SEPT14		septin 14

Fetching correlation data, please wait...
Getting list of correlations for id 13511.
Getting list of p-values for id 13511.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8137666	8148964	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8137666	7896742	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8137666	7911347	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8137666	7945342	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8137666	8031990	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8137666	8085054	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8137666	8110670	NM_207366	SEPT14	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
8	8137666	7911329	NM_207366	SEPT14	0.971560	2.927317e-66	5.072162e-62	6.340203e-63
9	8137666	7927095	BC032332	PCMTD2	0.947080	1.223152e-52	2.119355e-48	2.354839e-49
10	8137666	7924549	BC032332	PCMTD2	0.938509	2.238233e-49	3.878186e-45	3.878186e-46
11	8137666	8049963	BC032332	PCMTD2	0.938509	2.238233e-49	3.878186e-45	3.525624e-46
12	8137666	7998117	NM_207366	SEPT14	0.937510	5.001759e-49	8.666547e-45	7.222123e-46
13	8137666	8097064	BC032332	PCMTD2	0.932523	2.297451e-47	3.980793e-43	3.062149e-44
14	8137666	8123520	BC118988	NCRNA00266	0.902551	1.761862e-39	3.052779e-35	2.180556e-36
15	8137666	8176865	BC032332	PCMTD2	0.881972	1.984194e-35	3.438013e-31	2.292009e-32
16	8137666	8177460	BC032332	PCMTD2	0.881972	1.984194e-35	3.438013e-31	2.148758e-32
17	8137666	8135929	ENST00000411257		0.818326	1.607682e-26	2.785630e-22	1.638606e-23
18	8137666	8097062	ENST00000411293		0.818219	1.652176e-26	2.862726e-22	1.590403e-23
19	8137666	8132690	ENST00000390855		0.814794	3.936777e-26	6.821254e-22	3.590134e-23
20	8137666	7924551	ENST00000390855		0.814794	3.936777e-26	6.821254e-22	3.410627e-23
21	8137666	7925523	ENST00000390855		0.814794	3.936777e-26	6.821254e-22	3.248216e-23
22	8137666	7911349	ENST00000411249		0.813954	4.858365e-26	8.418090e-22	3.826404e-23
23	8137666	7911331	ENST00000410382		0.793883	5.490118e-24	9.512728e-20	4.135969e-21
24	8137666	7924463	ENST00000410382		0.793883	5.490118e-24	9.512728e-20	3.963637e-21
25	8137666	7927089	ENST00000410382		0.793883	5.490118e-24	9.512728e-20	3.805091e-21
26	8137666	7945347	ENST00000410382		0.793883	5.490118e-24	9.512728e-20	3.658742e-21
27	8137666	7998115	ENST00000410382		0.793883	5.490118e-24	9.512728e-20	3.523233e-21
28	8137666	8031997	ENST00000410382		0.793883	5.490118e-24	9.512728e-20	3.397403e-21
29	8137666	8102530	ENST00000410382		0.793883	5.490118e-24	9.512728e-20	3.280251e-21
30	8137666	8137668	ENST00000410382		0.793883	5.490118e-24	9.512728e-20	3.170909e-21
31	8137666	8104607			0.787643	2.147940e-23	3.721736e-19	1.200560e-20
32	8137666	8101511	NM_014991	WDFY3	0.785762	3.211818e-23	5.565118e-19	1.739099e-20
33	8137666	8152863	ENST00000363205		0.764574	2.293916e-21	3.974668e-17	1.204445e-18
34	8137666	7983910	NM_020980	AQP9	0.760757	4.720439e-21	8.179105e-17	2.405619e-18
35	8137666	8113103	NM_001145678	C5orf36	0.759899	5.541238e-21	9.601304e-17	2.743230e-18
36	8137666	8047381	NM_003879	CFLAR	0.758797	6.802630e-21	1.178692e-16	3.274144e-18
37	8137666	7936064	NM_012229	NT5C2	0.757431	8.756124e-21	1.517174e-16	4.100469e-18
38	8137666	8102817	NM_201999	ELF2	0.756442	1.050332e-20	1.819910e-16	4.789238e-18
39	8137666	8040552	NM_147223	NCOA1	0.756439	1.050978e-20	1.821030e-16	4.669307e-18
40	8137666	8110668	ENST00000410601		0.753996	1.640713e-20	2.842864e-16	7.107161e-18
41	8137666	7957570	NM_005761	PLXNC1	0.753492	1.797510e-20	3.114546e-16	7.596453e-18
42	8137666	8099410	NM_148894	BOD1L	0.752386	2.194336e-20	3.802126e-16	9.052681e-18
43	8137666	8119000	NM_001315	MAPK14	0.752279	2.236769e-20	3.875649e-16	9.013138e-18
44	8137666	8083901	NM_022763	FNDC3B	0.751723	2.471684e-20	4.282687e-16	9.733380e-18
45	8137666	8047161	NM_001031716	OBFC2A	0.750681	2.978067e-20	5.160097e-16	1.146688e-17
46	8137666	7980005	NM_001005743	NUMB	0.750282	3.197686e-20	5.540631e-16	1.204485e-17
47	8137666	7950838	NM_007166	PICALM	0.747557	5.179102e-20	8.973830e-16	1.909326e-17
48	8137666	7999476			0.746859	5.853616e-20	1.014256e-15	2.113033e-17
49	8137666	8096675	NM_001127208	TET2	0.746674	6.046881e-20	1.047743e-15	2.138251e-17
50	8137666	8065280	NM_020343	RALGAPA2	0.742620	1.221545e-19	2.116571e-15	4.233141e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation