[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13541.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13541	8097064	BC032332	PCMTD2		protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2

Fetching correlation data, please wait...
Getting list of correlations for id 13541.
Getting list of p-values for id 13541.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8097064	7927095	BC032332	PCMTD2	0.982874	1.762504e-77	3.053892e-73	3.053892e-73
2	8097064	7924549	BC032332	PCMTD2	0.961981	7.154254e-60	1.239618e-55	6.198088e-56
3	8097064	8049963	BC032332	PCMTD2	0.961981	7.154254e-60	1.239618e-55	4.132059e-56
4	8097064	7911329	NM_207366	SEPT14	0.945202	7.022438e-52	1.216778e-47	3.041945e-48
5	8097064	7911347	NM_207366	SEPT14	0.932523	2.297451e-47	3.980793e-43	7.961586e-44
6	8097064	7945342	NM_207366	SEPT14	0.932523	2.297451e-47	3.980793e-43	6.634655e-44
7	8097064	7896742	NM_207366	SEPT14	0.932523	2.297451e-47	3.980793e-43	5.686847e-44
8	8097064	8110670	NM_207366	SEPT14	0.932523	2.297451e-47	3.980793e-43	4.975991e-44
9	8097064	8137666	NM_207366	SEPT14	0.932523	2.297451e-47	3.980793e-43	4.423103e-44
10	8097064	8148964	NM_207366	SEPT14	0.932523	2.297451e-47	3.980793e-43	3.980793e-44
11	8097064	8031990	NM_207366	SEPT14	0.932523	2.297451e-47	3.980793e-43	3.618903e-44
12	8097064	8085054	NM_207366	SEPT14	0.932523	2.297451e-47	3.980793e-43	3.317328e-44
13	8097064	8177460	BC032332	PCMTD2	0.928578	3.873646e-46	6.711867e-42	5.162974e-43
14	8097064	8176865	BC032332	PCMTD2	0.928578	3.873646e-46	6.711867e-42	4.794190e-43
15	8097064	8123520	BC118988	NCRNA00266	0.908051	1.019750e-40	1.766921e-36	1.177947e-37
16	8097064	7998117	NM_207366	SEPT14	0.888502	1.256346e-36	2.176870e-32	1.360544e-33
17	8097064	7911349	ENST00000411249		0.822314	5.711044e-27	9.895527e-23	5.820898e-24
18	8097064	8097062	ENST00000411293		0.816965	2.275371e-26	3.942536e-22	2.190298e-23
19	8097064	8135929	ENST00000411257		0.812941	6.250979e-26	1.083107e-21	5.700564e-23
20	8097064	7925523	ENST00000390855		0.812464	7.035449e-26	1.219032e-21	6.095161e-23
21	8097064	7924551	ENST00000390855		0.812464	7.035449e-26	1.219032e-21	5.804915e-23
22	8097064	8132690	ENST00000390855		0.812464	7.035449e-26	1.219032e-21	5.541056e-23
23	8097064	7924463	ENST00000410382		0.805062	4.221635e-25	7.314827e-21	3.180359e-22
24	8097064	7911331	ENST00000410382		0.805062	4.221635e-25	7.314827e-21	3.047844e-22
25	8097064	7927089	ENST00000410382		0.805062	4.221635e-25	7.314827e-21	2.925931e-22
26	8097064	7945347	ENST00000410382		0.805062	4.221635e-25	7.314827e-21	2.813395e-22
27	8097064	7998115	ENST00000410382		0.805062	4.221635e-25	7.314827e-21	2.709195e-22
28	8097064	8031997	ENST00000410382		0.805062	4.221635e-25	7.314827e-21	2.612438e-22
29	8097064	8102530	ENST00000410382		0.805062	4.221635e-25	7.314827e-21	2.522354e-22
30	8097064	8137668	ENST00000410382		0.805062	4.221635e-25	7.314827e-21	2.438276e-22
31	8097064	8102817	NM_201999	ELF2	0.787873	2.044200e-23	3.541985e-19	1.142576e-20
32	8097064	8065280	NM_020343	RALGAPA2	0.786939	2.498325e-23	4.328847e-19	1.352765e-20
33	8097064	8104607			0.782067	6.996537e-23	1.212290e-18	3.673606e-20
34	8097064	8099410	NM_148894	BOD1L	0.781434	7.981463e-23	1.382948e-18	4.067494e-20
35	8097064	8014825	NM_032875	FBXL20	0.774709	3.154634e-22	5.466035e-18	1.561724e-19
36	8097064	7979044	NM_020921	NIN	0.773972	3.657349e-22	6.337089e-18	1.760303e-19
37	8097064	7945902	NM_016320	NUP98	0.773966	3.661170e-22	6.343710e-18	1.714516e-19
38	8097064	8068238	NM_207585	IFNAR2	0.773670	3.884313e-22	6.730349e-18	1.771144e-19
39	8097064	8143988	NM_170606	MLL3	0.772334	5.068000e-22	8.781323e-18	2.251621e-19
40	8097064	8067113	NM_006526	ZNF217	0.771548	5.921379e-22	1.025997e-17	2.564994e-19
41	8097064	8101511	NM_014991	WDFY3	0.771336	6.175453e-22	1.070021e-17	2.609807e-19
42	8097064	7999476			0.770816	6.841930e-22	1.185501e-17	2.822622e-19
43	8097064	7945829	ENST00000364746		0.769275	9.255344e-22	1.603673e-17	3.729473e-19
44	8097064	8007976	NM_006310	NPEPPS	0.768976	9.811964e-22	1.700119e-17	3.863907e-19
45	8097064	7936064	NM_012229	NT5C2	0.768940	9.881835e-22	1.712225e-17	3.804946e-19
46	8097064	7966268	NM_057169	GIT2	0.768257	1.128645e-21	1.955604e-17	4.251312e-19
47	8097064	8049512	NM_001137552	LRRFIP1	0.767606	1.280633e-21	2.218953e-17	4.721177e-19
48	8097064	8047161	NM_001031716	OBFC2A	0.766550	1.570633e-21	2.721435e-17	5.669657e-19
49	8097064	8089647	NM_001009899	KIAA2018	0.764951	2.134717e-21	3.698824e-17	7.548621e-19
50	8097064	8040552	NM_147223	NCOA1	0.764339	2.399484e-21	4.157585e-17	8.315171e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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