[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12720.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12720	8176865	BC032332	PCMTD2		protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2

Fetching correlation data, please wait...
Getting list of correlations for id 12720.
Getting list of p-values for id 12720.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.096 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8176865	8177460	BC032332	PCMTD2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8176865	7927095	BC032332	PCMTD2	0.948902	2.106904e-53	3.650633e-49	1.825316e-49
3	8176865	8097064	BC032332	PCMTD2	0.928578	3.873646e-46	6.711867e-42	2.237289e-42
4	8176865	8049963	BC032332	PCMTD2	0.915372	1.718537e-42	2.977710e-38	7.444274e-39
5	8176865	7924549	BC032332	PCMTD2	0.915372	1.718537e-42	2.977710e-38	5.955419e-39
6	8176865	8148964	NM_207366	SEPT14	0.881972	1.984194e-35	3.438013e-31	5.730022e-32
7	8176865	8137666	NM_207366	SEPT14	0.881972	1.984194e-35	3.438013e-31	4.911447e-32
8	8176865	7945342	NM_207366	SEPT14	0.881972	1.984194e-35	3.438013e-31	4.297516e-32
9	8176865	7896742	NM_207366	SEPT14	0.881972	1.984194e-35	3.438013e-31	3.820015e-32
10	8176865	8085054	NM_207366	SEPT14	0.881972	1.984194e-35	3.438013e-31	3.438013e-32
11	8176865	7911347	NM_207366	SEPT14	0.881972	1.984194e-35	3.438013e-31	3.125466e-32
12	8176865	8031990	NM_207366	SEPT14	0.881972	1.984194e-35	3.438013e-31	2.865011e-32
13	8176865	8110670	NM_207366	SEPT14	0.881972	1.984194e-35	3.438013e-31	2.644625e-32
14	8176865	8123520	BC118988	NCRNA00266	0.865274	1.163893e-32	2.016677e-28	1.440484e-29
15	8176865	7911329	NM_207366	SEPT14	0.863155	2.457798e-32	4.258627e-28	2.839084e-29
16	8176865	7998117	NM_207366	SEPT14	0.833909	2.417526e-28	4.188848e-24	2.618030e-25
17	8176865	8097062	ENST00000411293		0.817475	1.998221e-26	3.462318e-22	2.036658e-23
18	8176865	7911349	ENST00000411249		0.792692	7.148307e-24	1.238587e-19	6.881040e-21
19	8176865	7924551	ENST00000390855		0.787044	2.442631e-23	4.232347e-19	2.227551e-20
20	8176865	7925523	ENST00000390855		0.787044	2.442631e-23	4.232347e-19	2.116173e-20
21	8176865	8132690	ENST00000390855		0.787044	2.442631e-23	4.232347e-19	2.015403e-20
22	8176865	8135929	ENST00000411257		0.786700	2.629504e-23	4.556142e-19	2.070973e-20
23	8176865	8104607			0.781936	7.190503e-23	1.245898e-18	5.416950e-20
24	8176865	7927089	ENST00000410382		0.766098	1.713331e-21	2.968688e-17	1.236953e-18
25	8176865	7924463	ENST00000410382		0.766098	1.713331e-21	2.968688e-17	1.187475e-18
26	8176865	7998115	ENST00000410382		0.766098	1.713331e-21	2.968688e-17	1.141803e-18
27	8176865	8031997	ENST00000410382		0.766098	1.713331e-21	2.968688e-17	1.099514e-18
28	8176865	7911331	ENST00000410382		0.766098	1.713331e-21	2.968688e-17	1.060246e-18
29	8176865	8102530	ENST00000410382		0.766098	1.713331e-21	2.968688e-17	1.023686e-18
30	8176865	8137668	ENST00000410382		0.766098	1.713331e-21	2.968688e-17	9.895627e-19
31	8176865	7945347	ENST00000410382		0.766098	1.713331e-21	2.968688e-17	9.576413e-19
32	8176865	7967255	NM_002956	CLIP1	0.752476	2.158854e-20	3.740647e-16	1.168952e-17
33	8176865	8014825	NM_032875	FBXL20	0.746926	5.785759e-20	1.002498e-15	3.037874e-17
34	8176865	7999476			0.739730	2.000686e-19	3.466589e-15	1.019585e-16
35	8176865	8110668	ENST00000410601		0.735374	4.157686e-19	7.204023e-15	2.058292e-16
36	8176865	7920472	NM_152263	TPM3	0.734235	5.021571e-19	8.700876e-15	2.416910e-16
37	8176865	8102817	NM_201999	ELF2	0.733490	5.678725e-19	9.839526e-15	2.659331e-16
38	8176865	7979044	NM_020921	NIN	0.726198	1.853374e-18	3.211341e-14	8.450898e-16
39	8176865	8083901	NM_022763	FNDC3B	0.723409	2.884606e-18	4.998157e-14	1.281579e-15
40	8176865	7966268	NM_057169	GIT2	0.722898	3.126248e-18	5.416850e-14	1.354213e-15
41	8176865	8007976	NM_006310	NPEPPS	0.722376	3.393467e-18	5.879861e-14	1.434112e-15
42	8176865	8099410	NM_148894	BOD1L	0.719903	4.991814e-18	8.649317e-14	2.059361e-15
43	8176865	8096675	NM_001127208	TET2	0.717349	7.404925e-18	1.283051e-13	2.983840e-15
44	8176865	8040552	NM_147223	NCOA1	0.717084	7.712457e-18	1.336337e-13	3.037131e-15
45	8176865	7913824	NM_020317	C1orf63	0.716603	8.302410e-18	1.438559e-13	3.196797e-15
46	8176865	8143988	NM_170606	MLL3	0.713893	1.254121e-17	2.173015e-13	4.723946e-15
47	8176865	7945829	ENST00000364746		0.711393	1.826833e-17	3.165354e-13	6.734795e-15
48	8176865	8152845	BC017297	FAM49B	0.711112	1.905487e-17	3.301638e-13	6.878412e-15
49	8176865	8009014	NM_006852	TLK2	0.709722	2.344283e-17	4.061939e-13	8.289672e-15
50	8176865	8101511	NM_014991	WDFY3	0.708716	2.721413e-17	4.715392e-13	9.430785e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation