[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16242.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16242	7924463	ENST00000410382

Fetching correlation data, please wait...
Getting list of correlations for id 16242.
Getting list of p-values for id 16242.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.111 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7924463	8031997	ENST00000410382		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7924463	7998115	ENST00000410382		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7924463	7911331	ENST00000410382		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	7924463	7927089	ENST00000410382		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	7924463	7945347	ENST00000410382		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	7924463	8137668	ENST00000410382		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	7924463	8102530	ENST00000410382		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
8	7924463	8135929	ENST00000411257		0.985018	1.894672e-80	3.282898e-76	4.103622e-77
9	7924463	7925523	ENST00000390855		0.984166	3.205693e-79	5.554504e-75	6.171671e-76
10	7924463	8132690	ENST00000390855		0.984166	3.205693e-79	5.554504e-75	5.554504e-76
11	7924463	7924551	ENST00000390855		0.984166	3.205693e-79	5.554504e-75	5.049549e-76
12	7924463	7911349	ENST00000411249		0.929437	2.123138e-46	3.678761e-42	3.065634e-43
13	7924463	8110668	ENST00000410601		0.910375	2.898058e-41	5.021466e-37	3.862666e-38
14	7924463	8097062	ENST00000411293		0.889368	8.600920e-37	1.490281e-32	1.064487e-33
15	7924463	8104607			0.851515	1.207881e-30	2.092895e-26	1.395263e-27
16	7924463	8047381	NM_003879	CFLAR	0.838005	7.459159e-29	1.292449e-24	8.077803e-26
17	7924463	8101511	NM_014991	WDFY3	0.831989	4.148536e-28	7.188169e-24	4.228335e-25
18	7924463	7983910	NM_020980	AQP9	0.816855	2.339812e-26	4.054193e-22	2.252329e-23
19	7924463	7927095	BC032332	PCMTD2	0.815505	3.292983e-26	5.705752e-22	3.003028e-23
20	7924463	7980005	NM_001005743	NUMB	0.814918	3.816922e-26	6.613581e-22	3.306791e-23
21	7924463	8140840	NM_024636	STEAP4	0.812781	6.504620e-26	1.127055e-21	5.366931e-23
22	7924463	7919749	ENST00000411082		0.812768	6.524550e-26	1.130509e-21	5.138676e-23
23	7924463	8016745	NM_001130528	SPAG9	0.811464	9.002770e-26	1.559910e-21	6.782217e-23
24	7924463	7987192	NM_001042496	SLC12A6	0.808172	2.007251e-25	3.477964e-21	1.449152e-22
25	7924463	7936064	NM_012229	NT5C2	0.807065	2.619449e-25	4.538719e-21	1.815488e-22
26	7924463	8097064	BC032332	PCMTD2	0.805062	4.221635e-25	7.314827e-21	2.813395e-22
27	7924463	8108873	NM_015071	ARHGAP26	0.804481	4.842546e-25	8.390679e-21	3.107659e-22
28	7924463	7957570	NM_005761	PLXNC1	0.803122	6.666850e-25	1.155165e-20	4.125589e-22
29	7924463	7979085	NM_002863	PYGL	0.801251	1.030908e-24	1.786254e-20	6.159498e-22
30	7924463	8103951	NM_001995	ACSL1	0.800068	1.354708e-24	2.347302e-20	7.824341e-22
31	7924463	8139767	ENST00000411398		0.799176	1.662509e-24	2.880630e-20	9.292355e-22
32	7924463	7999476			0.797283	2.559167e-24	4.434269e-20	1.385709e-21
33	7924463	7946478	NM_015213	DENND5A	0.796560	3.014065e-24	5.222470e-20	1.582567e-21
34	7924463	8040630	ENST00000363002		0.794040	5.301673e-24	9.186209e-20	2.701826e-21
35	7924463	7896742	NM_207366	SEPT14	0.793883	5.490118e-24	9.512728e-20	2.717922e-21
36	7924463	7911347	NM_207366	SEPT14	0.793883	5.490118e-24	9.512728e-20	2.642424e-21
37	7924463	8137666	NM_207366	SEPT14	0.793883	5.490118e-24	9.512728e-20	2.571008e-21
38	7924463	7945342	NM_207366	SEPT14	0.793883	5.490118e-24	9.512728e-20	2.503350e-21
39	7924463	8031990	NM_207366	SEPT14	0.793883	5.490118e-24	9.512728e-20	2.439161e-21
40	7924463	8085054	NM_207366	SEPT14	0.793883	5.490118e-24	9.512728e-20	2.378182e-21
41	7924463	8110670	NM_207366	SEPT14	0.793883	5.490118e-24	9.512728e-20	2.320178e-21
42	7924463	8148964	NM_207366	SEPT14	0.793883	5.490118e-24	9.512728e-20	2.264935e-21
43	7924463	8092691	NM_001706	BCL6	0.791402	9.496361e-24	1.645435e-19	3.826592e-21
44	7924463	8047161	NM_001031716	OBFC2A	0.791125	1.009077e-23	1.748427e-19	3.973698e-21
45	7924463	7987048	NM_017762	MTMR10	0.787974	2.000457e-23	3.466192e-19	7.702648e-21
46	7924463	7946516	NM_030962	SBF2	0.786900	2.519007e-23	4.364683e-19	9.488441e-21
47	7924463	8093961	NM_014743	KIAA0232	0.783721	4.946757e-23	8.571246e-19	1.823669e-20
48	7924463	7911329	NM_207366	SEPT14	0.782960	5.804526e-23	1.005750e-18	2.095313e-20
49	7924463	7950838	NM_007166	PICALM	0.782828	5.967448e-23	1.033980e-18	2.110163e-20
50	7924463	8096669	NM_017628	TET2	0.782407	6.516465e-23	1.129108e-18	2.258216e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation