[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3501	8102362	NM_052864	TIFA		TRAF-interacting protein with forkhead-associated domain

Fetching correlation data, please wait...
Getting list of correlations for id 3501.
Getting list of p-values for id 3501.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8102362	8157021	NM_015469	NIPSNAP3A	0.688857	4.574257e-16	7.925814e-12	7.925814e-12
2	8102362	8114653	NM_005642	TAF7	0.673746	3.382569e-15	5.860977e-11	2.930488e-11
3	8102362	7969979	NM_032859	ABHD13	0.663495	1.230735e-14	2.132495e-10	7.108316e-11
4	8102362	8131871	NM_138771	CCDC126	0.653082	4.344661e-14	7.527994e-10	1.881999e-10
5	8102362	8085660	NM_206831	DPH3	0.652046	4.912204e-14	8.511377e-10	1.702275e-10
6	8102362	7934278	NM_000917	P4HA1	0.651976	4.953097e-14	8.582231e-10	1.430372e-10
7	8102362	8097507	NM_031296	RAB33B	0.642139	1.552563e-13	2.690126e-9	3.843037e-10
8	8102362	8020903	NM_020474	GALNT1	0.640905	1.786480e-13	3.095433e-9	3.869292e-10
9	8102362	8136179	AF277175	KLHDC10	0.638551	2.331048e-13	4.039006e-9	4.487784e-10
10	8102362	8161575	ENST00000377395		0.637178	2.719751e-13	4.712513e-9	4.712513e-10
11	8102362	8047228	NM_199482	MOBKL3	0.636092	3.070540e-13	5.320324e-9	4.836658e-10
12	8102362	8102518	NM_001001701	C4orf3	0.635553	3.260541e-13	5.649539e-9	4.707949e-10
13	8102362	8154178	NM_004972	JAK2	0.634836	3.531249e-13	6.118595e-9	4.706612e-10
14	8102362	8160581	NM_005802	TOPORS	0.630133	5.926529e-13	1.026890e-8	7.334926e-10
15	8102362	8142307	NM_015723	PNPLA8	0.627921	7.537565e-13	1.306034e-8	8.706893e-10
16	8102362	7965846	NM_016053	CCDC53	0.621977	1.425143e-12	2.469345e-8	1.543341e-9
17	8102362	8048752	NM_022915	MRPL44	0.621300	1.531031e-12	2.652817e-8	1.560481e-9
18	8102362	7976080	NM_003608	GPR65	0.621083	1.566604e-12	2.714455e-8	1.508031e-9
19	8102362	7922474	NM_014656	KIAA0040	0.619808	1.791909e-12	3.104840e-8	1.634126e-9
20	8102362	8122818	BC011348	C6orf211	0.619784	1.796469e-12	3.112741e-8	1.556371e-9
21	8102362	7989611	NM_032231	FAM96A	0.619494	1.852087e-12	3.209112e-8	1.528148e-9
22	8102362	7927786	NM_001001330	REEP3	0.618044	2.156073e-12	3.735828e-8	1.698103e-9
23	8102362	7901867	NM_003368	USP1	0.617987	2.169113e-12	3.758422e-8	1.634097e-9
24	8102362	7962013	NM_016570	ERGIC2	0.617205	2.353563e-12	4.078018e-8	1.699174e-9
25	8102362	8055672	NM_015702	MMADHC	0.615242	2.885940e-12	5.000469e-8	2.000188e-9
26	8102362	8111941	NM_001098272	HMGCS1	0.614836	3.009581e-12	5.214700e-8	2.005654e-9
27	8102362	8112967	NM_174909	TMEM167A	0.614107	3.244846e-12	5.622345e-8	2.082350e-9
28	8102362	8081256	NM_018309	TBC1D23	0.610663	4.618107e-12	8.001795e-8	2.857784e-9
29	8102362	8105481	NM_152687	GAPT	0.610530	4.681296e-12	8.111281e-8	2.796993e-9
30	8102362	8139232	NM_002787	PSMA2	0.610293	4.795675e-12	8.309466e-8	2.769822e-9
31	8102362	7954511	NM_015000	STK38L	0.610101	4.890093e-12	8.473064e-8	2.733246e-9
32	8102362	7984103	NM_032857	LACTB	0.609982	4.949755e-12	8.576441e-8	2.680138e-9
33	8102362	7931754	NM_004508	IDI1	0.609049	5.440903e-12	9.427453e-8	2.856804e-9
34	8102362	7974603	NM_002788	PSMA3	0.607456	6.391019e-12	1.107372e-7	3.256976e-9
35	8102362	7951408	NM_052889	CARD16	0.606293	7.183301e-12	1.244651e-7	3.556145e-9
36	8102362	8014066	NM_001003927	EVI2A	0.605713	7.613253e-12	1.319148e-7	3.664301e-9
37	8102362	7995258	NM_003414	ZNF267	0.602868	1.010819e-11	1.751445e-7	4.733636e-9
38	8102362	8147439	NM_024613	PLEKHF2	0.601797	1.123788e-11	1.947187e-7	5.124176e-9
39	8102362	8131957	NM_013322	SNX10	0.601553	1.151210e-11	1.994702e-7	5.114621e-9
40	8102362	7925043	NM_175876	EXOC8	0.601164	1.196242e-11	2.072729e-7	5.181823e-9
41	8102362	8066402	NM_016470	C20orf111	0.601023	1.212910e-11	2.101609e-7	5.125876e-9
42	8102362	8171896	BC020611	CXorf21	0.600887	1.229289e-11	2.129990e-7	5.071404e-9
43	8102362	8089527	NM_022488	ATG3	0.600795	1.240475e-11	2.149372e-7	4.998539e-9
44	8102362	8067295	NM_016045	SLMO2	0.600509	1.275888e-11	2.210732e-7	5.024391e-9
45	8102362	8135688	NM_016200	NAA38	0.599736	1.376438e-11	2.384954e-7	5.299898e-9
46	8102362	8135625	NM_006136	CAPZA2	0.596951	1.806275e-11	3.129732e-7	6.803766e-9
47	8102362	7956795	NM_013254	TBK1	0.595474	2.084238e-11	3.611358e-7	7.683741e-9
48	8102362	7910550	NM_005999	TSNAX	0.594747	2.235552e-11	3.873540e-7	8.069875e-9
49	8102362	8083839	NM_014373	GPR160	0.592435	2.791176e-11	4.836271e-7	9.869942e-9
50	8102362	8151401	NM_001001481	UBE2W	0.592309	2.825101e-11	4.895053e-7	9.790107e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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