[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2333	8109969	NM_021025	TLX3		T-cell leukemia homeobox 3

Fetching correlation data, please wait...
Getting list of correlations for id 2333.
Getting list of p-values for id 2333.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8109969	8132805	NM_198570	VWC2	0.753635	1.751343e-20	3.034552e-16	3.034552e-16
2	8109969	8073449	NM_014460	CSDC2	0.740619	1.720313e-19	2.980786e-15	1.490393e-15
3	8109969	8014969	NM_152219	GJD3	0.738444	2.486564e-19	4.308469e-15	1.436156e-15
4	8109969	7950032	NM_002007	FGF4	0.735322	4.193431e-19	7.265957e-15	1.816489e-15
5	8109969	8137959	NM_001080495	TNRC18	0.734824	4.554807e-19	7.892115e-15	1.578423e-15
6	8109969	7940022	NM_178570	RTN4RL2	0.734427	4.864690e-19	8.429049e-15	1.404842e-15
7	8109969	7937433	NM_000797	DRD4	0.730980	8.570045e-19	1.484932e-14	2.121331e-15
8	8109969	7968260	NM_145657	GSX1	0.730709	8.956088e-19	1.551821e-14	1.939777e-15
9	8109969	8024429	NM_000479	AMH	0.730464	9.321035e-19	1.615056e-14	1.794506e-15
10	8109969	7912004	NM_207370	GPR153	0.729096	1.163466e-18	2.015938e-14	2.015938e-15
11	8109969	8053183	NM_001009812	LBX2	0.728569	1.266806e-18	2.194994e-14	1.995449e-15
12	8109969	8159554	NM_207309	UAP1L1	0.725216	2.166920e-18	3.754623e-14	3.128853e-15
13	8109969	7947363	NM_024424	WT1	0.722701	3.224637e-18	5.587328e-14	4.297945e-15
14	8109969	7967705	ENST00000390949		0.719291	5.489018e-18	9.510821e-14	6.793444e-15
15	8109969	7959925	ENST00000390949		0.719291	5.489018e-18	9.510821e-14	6.340548e-15
16	8109969	7998902	NM_017885	HCFC1R1	0.718695	6.018813e-18	1.042880e-13	6.517998e-15
17	8109969	7918416	NM_006492	ALX3	0.717825	6.882817e-18	1.192586e-13	7.015210e-15
18	8109969	8054831	NM_001426	EN1	0.717418	7.327050e-18	1.269558e-13	7.053099e-15
19	8109969	8024605	NM_021938	CELF5	0.716151	8.897066e-18	1.541595e-13	8.113656e-15
20	8109969	8015252	NM_031964	KRTAP17-1	0.714626	1.122239e-17	1.944503e-13	9.722516e-15
21	8109969	7997733	NM_005251	FOXC2	0.714617	1.123670e-17	1.946983e-13	9.271348e-15
22	8109969	8110382	NM_030567	PRR7	0.714543	1.136447e-17	1.969121e-13	8.950551e-15
23	8109969	7920744	NM_000298	PKLR	0.714380	1.164909e-17	2.018437e-13	8.775814e-15
24	8109969	8161265	NM_001007563	IGFBPL1	0.714099	1.215617e-17	2.106299e-13	8.776245e-15
25	8109969	7991459	NM_020211	RGMA	0.713586	1.313621e-17	2.276111e-13	9.104444e-15
26	8109969	8141643	NM_001015072	UFSP1	0.712646	1.513630e-17	2.622667e-13	1.008718e-14
27	8109969	7934141	NM_022146	NPFFR1	0.710837	1.985468e-17	3.440221e-13	1.274156e-14
28	8109969	8007637	NM_001466	FZD2	0.710314	2.146329e-17	3.718944e-13	1.328194e-14
29	8109969	7896779	NM_198317	KLHL17	0.710205	2.181689e-17	3.780212e-13	1.303521e-14
30	8109969	7898377	NM_014675	CROCC	0.709756	2.332470e-17	4.041470e-13	1.347157e-14
31	8109969	8159142	NM_000093	COL5A1	0.709696	2.353066e-17	4.077158e-13	1.315212e-14
32	8109969	8030015	NM_012451	SYNGR4	0.709109	2.567347e-17	4.448442e-13	1.390138e-14
33	8109969	8067610	NM_000744	CHRNA4	0.708396	2.853238e-17	4.943805e-13	1.498123e-14
34	8109969	8074131	NM_001080420	SHANK3	0.708147	2.960376e-17	5.129444e-13	1.508660e-14
35	8109969	8133339	NM_001077621	VPS37D	0.707659	3.181265e-17	5.512179e-13	1.574908e-14
36	8109969	8138770	NM_000522	HOXA13	0.707612	3.203156e-17	5.550108e-13	1.541697e-14
37	8109969	8148867	NM_145754	KIFC2	0.707181	3.413218e-17	5.914083e-13	1.598401e-14
38	8109969	8010696	NM_148896	NPB	0.707167	3.420120e-17	5.926042e-13	1.559485e-14
39	8109969	8019693	NM_148896	NPB	0.707167	3.420120e-17	5.926042e-13	1.519498e-14
40	8109969	7992269	ENST00000301714		0.706665	3.682167e-17	6.380092e-13	1.595023e-14
41	8109969	7942693	NM_138706	B3GNT6	0.706177	3.955179e-17	6.853138e-13	1.671497e-14
42	8109969	7997569	NM_139174	ADAD2	0.705811	4.172333e-17	7.229401e-13	1.721286e-14
43	8109969	8060134	NM_004321	KIF1A	0.705458	4.393742e-17	7.613037e-13	1.770474e-14
44	8109969	8110872	NM_033267	IRX2	0.705215	4.552276e-17	7.887728e-13	1.792665e-14
45	8109969	8098782	NM_006651	CPLX1	0.704923	4.750197e-17	8.230666e-13	1.829037e-14
46	8109969	7991332	NM_018670	MESP1	0.704856	4.796964e-17	8.311699e-13	1.806891e-14
47	8109969	8073941	ENST00000411210		0.704636	4.953105e-17	8.582246e-13	1.826010e-14
48	8109969	8037502	NM_001131067	NKPD1	0.704521	5.036051e-17	8.725965e-13	1.817909e-14
49	8109969	7962625	NM_001098531	RAPGEF3	0.704510	5.044108e-17	8.739927e-13	1.783659e-14
50	8109969	7979876	ENST00000413777		0.704078	5.371035e-17	9.306393e-13	1.861279e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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