[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
3992	8118142	NM_000594	TNF		tumor necrosis factor
3993	8177983	NM_000594	TNF		tumor necrosis factor
3994	8179263	NM_000594	TNF		tumor necrosis factor

Fetching correlation data, please wait...
Getting list of correlations for id 3992.
Getting list of p-values for id 3992.
1 of 3 done.
Getting list of correlations for id 3993.
Getting list of p-values for id 3993.
2 of 3 done.
Getting list of correlations for id 3994.
Getting list of p-values for id 3994.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.258 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179263	8177983	NM_000594	TNF	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179263	8118142	NM_000594	TNF	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8177983	8179263	NM_000594	TNF	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8177983	8118142	NM_000594	TNF	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8118142	8177983	NM_000594	TNF	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8118142	8179263	NM_000594	TNF	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8177983	8015575	NR_024573	GHDC	0.611527	4.228604e-12	2.198071e-7	3.140101e-8
8	8179263	8015575	NR_024573	GHDC	0.611527	4.228604e-12	2.198071e-7	2.747589e-8
9	8118142	8015575	NR_024573	GHDC	0.611527	4.228604e-12	2.198071e-7	2.442301e-8
10	8118142	8012054	NM_001365	DLG4	0.600623	1.261624e-11	6.558050e-7	6.558050e-8
11	8177983	8012054	NM_001365	DLG4	0.600623	1.261624e-11	6.558050e-7	5.961864e-8
12	8179263	8012054	NM_001365	DLG4	0.600623	1.261624e-11	6.558050e-7	5.465042e-8
13	8118142	7903632	NM_001408	CELSR2	0.582034	7.415728e-11	3.854770e-6	2.965207e-7
14	8179263	7903632	NM_001408	CELSR2	0.582034	7.415728e-11	3.854770e-6	2.753407e-7
15	8177983	7903632	NM_001408	CELSR2	0.582034	7.415728e-11	3.854770e-6	2.569846e-7
16	8177983	8125072	NM_025258	C6orf27	0.579024	9.776957e-11	5.082160e-6	3.176350e-7
17	8179263	8125072	NM_025258	C6orf27	0.579024	9.776957e-11	5.082160e-6	2.989506e-7
18	8118142	8125072	NM_025258	C6orf27	0.579024	9.776957e-11	5.082160e-6	2.823422e-7
19	8118142	7944341	NM_006760	UPK2	0.573926	1.551417e-10	8.064423e-6	4.244433e-7
20	8177983	7944341	NM_006760	UPK2	0.573926	1.551417e-10	8.064423e-6	4.032211e-7
21	8179263	7944341	NM_006760	UPK2	0.573926	1.551417e-10	8.064423e-6	3.840201e-7
22	8179263	7939620	NM_152312	GYLTL1B	0.570874	2.037701e-10	1.059218e-5	4.814625e-7
23	8177983	7939620	NM_152312	GYLTL1B	0.570874	2.037701e-10	1.059218e-5	4.605294e-7
24	8118142	7939620	NM_152312	GYLTL1B	0.570874	2.037701e-10	1.059218e-5	4.413407e-7
25	8177983	7901634	NR_026782	C1orf175	0.568022	2.622477e-10	1.363190e-5	5.452760e-7
26	8179263	7901634	NR_026782	C1orf175	0.568022	2.622477e-10	1.363190e-5	5.243038e-7
27	8118142	7901634	NR_026782	C1orf175	0.568022	2.622477e-10	1.363190e-5	5.048852e-7
28	8118142	8036232	NM_001039876	C19orf46	0.567815	2.670795e-10	1.388306e-5	4.958236e-7
29	8177983	8036232	NM_001039876	C19orf46	0.567815	2.670795e-10	1.388306e-5	4.787262e-7
30	8179263	8036232	NM_001039876	C19orf46	0.567815	2.670795e-10	1.388306e-5	4.627687e-7
31	8179263	8038598	NM_016148	SHANK1	0.567281	2.798970e-10	1.454933e-5	4.693331e-7
32	8177983	8038598	NM_016148	SHANK1	0.567281	2.798970e-10	1.454933e-5	4.546664e-7
33	8118142	8038598	NM_016148	SHANK1	0.567281	2.798970e-10	1.454933e-5	4.408887e-7
34	8118142	8023984	NM_001194	HCN2	0.565459	3.283154e-10	1.706616e-5	5.019460e-7
35	8177983	8023984	NM_001194	HCN2	0.565459	3.283154e-10	1.706616e-5	4.876047e-7
36	8179263	8023984	NM_001194	HCN2	0.565459	3.283154e-10	1.706616e-5	4.740601e-7
37	8118142	8125383	NM_004557	NOTCH4	0.563263	3.974049e-10	2.065750e-5	5.583109e-7
38	8179263	8125383	NM_004557	NOTCH4	0.563263	3.974049e-10	2.065750e-5	5.436185e-7
39	8177983	8125383	NM_004557	NOTCH4	0.563263	3.974049e-10	2.065750e-5	5.296796e-7
40	8118142	7922823	NM_025191	EDEM3	-0.562406	4.279977e-10	2.224775e-5	5.561937e-7
41	8177983	7922823	NM_025191	EDEM3	-0.562406	4.279977e-10	2.224775e-5	5.426280e-7
42	8179263	7922823	NM_025191	EDEM3	-0.562406	4.279977e-10	2.224775e-5	5.297083e-7
43	8179263	8143919	NM_001003802	SMARCD3	0.561410	4.664027e-10	2.424408e-5	5.638158e-7
44	8118142	8143919	NM_001003802	SMARCD3	0.561410	4.664027e-10	2.424408e-5	5.510018e-7
45	8177983	8143919	NM_001003802	SMARCD3	0.561410	4.664027e-10	2.424408e-5	5.387573e-7
46	8118142	8059028	NM_194302	CCDC108	0.556147	7.309737e-10	3.799674e-5	8.260161e-7
47	8179263	8059028	NM_194302	CCDC108	0.556147	7.309737e-10	3.799674e-5	8.084413e-7
48	8177983	8059028	NM_194302	CCDC108	0.556147	7.309737e-10	3.799674e-5	7.915988e-7
49	8118142	7906433	ENST00000410620		0.555675	7.607243e-10	3.954321e-5	8.070043e-7
50	8177983	7906433	ENST00000410620		0.555675	7.607243e-10	3.954321e-5	7.908642e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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