[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1251	8152656	NM_001017926	ZHX1		zinc fingers and homeoboxes 1

Fetching correlation data, please wait...
Getting list of correlations for id 1251.
Getting list of p-values for id 1251.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.109 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8152656	8086141	NM_014805	EPM2AIP1	0.668559	6.543891e-15	1.133860e-10	1.133860e-10
2	8152656	7985053	NM_147188	FBXO22	0.665419	9.696146e-15	1.680051e-10	8.400256e-11
3	8152656	7986769	NM_130839	UBE3A	0.656585	2.858205e-14	4.952411e-10	1.650804e-10
4	8152656	7989159	NM_017661	ZNF280D	0.652783	4.501761e-14	7.800202e-10	1.950050e-10
5	8152656	7938448	NM_017944	USP47	0.642372	1.511832e-13	2.619551e-9	5.239101e-10
6	8152656	7958158	NM_013320	HCFC2	0.641231	1.721486e-13	2.982819e-9	4.971365e-10
7	8152656	8121161	NM_015323	KIAA0776	0.639580	2.075716e-13	3.596594e-9	5.137991e-10
8	8152656	8083092	NM_001080412	ZBTB38	0.639543	2.084365e-13	3.611579e-9	4.514474e-10
9	8152656	8036813	NM_001005851	ZNF780B	0.638940	2.231091e-13	3.865812e-9	4.295347e-10
10	8152656	7954419	NM_018638	ETNK1	0.638912	2.238191e-13	3.878114e-9	3.878114e-10
11	8152656	8128472	NM_006828	ASCC3	0.636196	3.035062e-13	5.258852e-9	4.780775e-10
12	8152656	7951144	NM_024725	CCDC82	0.633826	3.949559e-13	6.843401e-9	5.702834e-10
13	8152656	8113023	NM_153354	TMEM161B	0.631178	5.286364e-13	9.159683e-9	7.045910e-10
14	8152656	7969228	NM_001004127	ALG11	0.628540	7.048402e-13	1.221277e-8	8.723405e-10
15	8152656	8069532	NM_006948	HSPA13	0.627517	7.875002e-13	1.364502e-8	9.096677e-10
16	8152656	7979223	NM_001160148	DDHD1	0.626853	8.460600e-13	1.465968e-8	9.162301e-10
17	8152656	7902594	NM_182948	PRKACB	0.625018	1.030574e-12	1.785676e-8	1.050397e-9
18	8152656	7923119	NM_194314	ZBTB41	0.620842	1.606935e-12	2.784337e-8	1.546854e-9
19	8152656	8113733	NM_153223	CEP120	0.619683	1.815626e-12	3.145935e-8	1.655755e-9
20	8152656	8103646	NM_012224	NEK1	0.619599	1.831860e-12	3.174064e-8	1.587032e-9
21	8152656	8102171	NM_033115	TBCK	0.618963	1.958312e-12	3.393167e-8	1.615794e-9
22	8152656	7932285	NM_024948	FAM188A	0.618462	2.063801e-12	3.575948e-8	1.625431e-9
23	8152656	7947221	NM_018362	LIN7C	0.617752	2.222849e-12	3.851530e-8	1.674578e-9
24	8152656	7946635	NM_021211	ZBED5	0.617175	2.360928e-12	4.090779e-8	1.704491e-9
25	8152656	8171747	NM_001412	EIF1AX	0.616500	2.532784e-12	4.388555e-8	1.755422e-9
26	8152656	7972180	NM_024546	RNF219	0.614682	3.057998e-12	5.298593e-8	2.037920e-9
27	8152656	7902992	NM_024813	RPAP2	0.614210	3.210420e-12	5.562695e-8	2.060257e-9
28	8152656	8129706	NM_006620	HBS1L	0.614006	3.278895e-12	5.681341e-8	2.029050e-9
29	8152656	8135688	NM_016200	NAA38	0.612276	3.916531e-12	6.786173e-8	2.340060e-9
30	8152656	8107282	NM_139281	WDR36	0.611903	4.069277e-12	7.050837e-8	2.350279e-9
31	8152656	7923141	NM_144977	DENND1B	0.611582	4.205046e-12	7.286083e-8	2.350349e-9
32	8152656	8020068	NM_015208	ANKRD12	0.611281	4.336100e-12	7.513161e-8	2.347863e-9
33	8152656	8168531	NM_032553	GPR174	0.610512	4.689789e-12	8.125997e-8	2.462423e-9
34	8152656	7970569	NM_014363	SACS	0.610011	4.934779e-12	8.550491e-8	2.514850e-9
35	8152656	8151561	NM_024699	ZFAND1	0.609430	5.234685e-12	9.070139e-8	2.591468e-9
36	8152656	8046695	NM_000885	ITGA4	0.609086	5.420609e-12	9.392289e-8	2.608969e-9
37	8152656	7956910	NM_018448	CAND1	0.608794	5.583134e-12	9.673897e-8	2.614567e-9
38	8152656	7901299	NM_016308	CMPK1	0.608582	5.704338e-12	9.883906e-8	2.601028e-9
39	8152656	8160016	NM_012416	RANBP6	0.608194	5.932158e-12	1.027865e-7	2.635551e-9
40	8152656	8092564	NM_004593	TRA2B	0.607671	6.254092e-12	1.083647e-7	2.709116e-9
41	8152656	7935320	NM_020123	TM9SF3	0.607422	6.412681e-12	1.111125e-7	2.710062e-9
42	8152656	8023735	NM_019022	TMX3	0.607080	6.637223e-12	1.150032e-7	2.738171e-9
43	8152656	7971967	NM_014953	DIS3	0.606483	7.047526e-12	1.221125e-7	2.839825e-9
44	8152656	7957540	NM_014050	MRPL42	0.605135	8.065933e-12	1.397584e-7	3.176328e-9
45	8152656	8027439	NM_001136156	ZNF507	0.604304	8.763247e-12	1.518408e-7	3.374240e-9
46	8152656	7974566	NM_018229	MUDENG	0.604281	8.783626e-12	1.521939e-7	3.308563e-9
47	8152656	8169792	NM_002351	SH2D1A	0.604250	8.811095e-12	1.526698e-7	3.248294e-9
48	8152656	8022473	NM_052911	ESCO1	0.603937	9.089943e-12	1.575014e-7	3.281280e-9
49	8152656	8038993	NM_006969	ZNF28	0.603549	9.447155e-12	1.636909e-7	3.340630e-9
50	8152656	7976080	NM_003608	GPR65	0.603209	9.771204e-12	1.693057e-7	3.386113e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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