[Correlation Browser / New Search] [List of best correlations] [List of all variables] [Stats] [Help/About]

Correlations in the bone dataset

Use the form to search for:

an EntrezGene ID (e.g. "1234")
an Accession Number (e.g. "BE644809" or "NM_005715")
a Gene Symbol (e.g. "HMGCR" or "ZNF532", not case-sensitive)
a variable label (e.g. "1562529_s_at" or "hsa-miR-29c*")
a variable number (e.g. "#1234" for the 1234^th variable in the dataset)

(View the full list of available key terms [here]).

Starting timer.
Connected to database.
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4461	203793_x_at	NM_007144	PCGF2		polycomb group ring finger 2
9943	214239_x_at	AI560455	PCGF2		polycomb group ring finger 2

Fetching correlation data, please wait...
Getting list of correlations for id 4461.
Getting list of p-values for id 4461.
1 of 2 done.
Getting list of correlations for id 9943.
Getting list of p-values for id 9943.
2 of 2 done.
Calculating corrections for multiple testing (n=46234), please wait...
Done; whole program took 0.159 seconds. Transmitting 50 results:

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	214239_x_at	213348_at	N33167	CDKN1C	0.749000	2.548389e-16	1.178222e-11	1.178222e-11
2	214239_x_at	227792_at	AA490685	ITPRIPL2	0.748285	2.818750e-16	1.303221e-11	6.516104e-12
3	214239_x_at	209087_x_at	AF089868	MCAM	0.734869	1.758071e-15	8.128266e-11	2.709422e-11
4	214239_x_at	212503_s_at	N22859	DIP2C	0.731944	2.582351e-15	1.193924e-10	2.984810e-11
5	214239_x_at	202260_s_at	NM_003165	STXBP1	0.729182	3.695302e-15	1.708486e-10	3.416972e-11
6	214239_x_at	202202_s_at	NM_002290	LAMA4	0.728130	4.231061e-15	1.956189e-10	3.260314e-11
7	214239_x_at	213675_at	W61005		0.726211	5.408219e-15	2.500436e-10	3.572052e-11
8	214239_x_at	203657_s_at	NM_003793	CTSF	0.715409	2.072569e-14	9.582315e-10	1.197789e-10
9	214239_x_at	219689_at	NM_020163	SEMA3G	0.715240	2.115600e-14	9.781265e-10	1.086807e-10
10	214239_x_at	209684_at	AL136924	RIN2	0.710320	3.820870e-14	1.766541e-9	1.766541e-10
11	214239_x_at	207076_s_at	NM_000050	ASS1	0.709422	4.250229e-14	1.965051e-9	1.786410e-10
12	214239_x_at	218651_s_at	NM_018357	LARP6	0.706275	6.155489e-14	2.845929e-9	2.371607e-10
13	214239_x_at	209737_at	AB014605	MAGI2	0.705242	6.943973e-14	3.210477e-9	2.469597e-10
14	214239_x_at	209120_at	AL037401	NR2F2	0.702091	9.996571e-14	4.621815e-9	3.301296e-10
15	214239_x_at	211340_s_at	M28882	MCAM	0.701633	1.053699e-13	4.871673e-9	3.247782e-10
16	214239_x_at	202011_at	NM_003257	TJP1	0.700209	1.239979e-13	5.732921e-9	3.583076e-10
17	214239_x_at	219091_s_at	NM_024756	MMRN2	0.699372	1.363959e-13	6.306130e-9	3.709488e-10
18	214239_x_at	203910_at	NM_004815	ARHGAP29	0.697501	1.685522e-13	7.792845e-9	4.329358e-10
19	214239_x_at	239262_at	AI498395		0.695177	2.187803e-13	1.011509e-8	5.323730e-10
20	214239_x_at	219064_at	NM_030569	ITIH5	0.694559	2.343998e-13	1.083724e-8	5.418620e-10
21	214239_x_at	215073_s_at	AL554245	NR2F2	0.694212	2.436340e-13	1.126417e-8	5.363892e-10
22	214239_x_at	218546_at	NM_024709	C1orf115	0.692495	2.947049e-13	1.362539e-8	6.193358e-10
23	214239_x_at	226137_at	AI288759	ZFHX3	0.691688	3.221569e-13	1.489460e-8	6.475914e-10
24	214239_x_at	226380_at	N21442	PTPN21	0.690950	3.494066e-13	1.615446e-8	6.731027e-10
25	214239_x_at	204894_s_at	NM_003734	AOC3	0.688988	4.329920e-13	2.001895e-8	8.007580e-10
26	214239_x_at	204589_at	NM_014840	NUAK1	0.687556	5.058853e-13	2.338910e-8	8.995809e-10
27	214239_x_at	212741_at	AA923354	MAOA	0.686448	5.702673e-13	2.636574e-8	9.765088e-10
28	214239_x_at	225078_at	AV686514	EMP2	0.685068	6.615016e-13	3.058387e-8	1.092281e-9
29	214239_x_at	202796_at	NM_007286	SYNPO	0.685039	6.635273e-13	3.067752e-8	1.057846e-9
30	214239_x_at	225274_at	BF247054	PCYOX1	0.683371	7.930230e-13	3.666463e-8	1.222154e-9
31	214239_x_at	1556364_at	AK057923		0.682848	8.384198e-13	3.876350e-8	1.250436e-9
32	214239_x_at	212950_at	BF941499	GPR116	0.682404	8.789352e-13	4.063669e-8	1.269897e-9
33	214239_x_at	211964_at	X05610	COL4A2	0.681661	9.508648e-13	4.396228e-8	1.332190e-9
34	214239_x_at	225688_s_at	AK025444	PHLDB2	0.680510	1.073804e-12	4.964626e-8	1.460184e-9
35	214239_x_at	226282_at	AW129783	PTPN14	0.679939	1.140214e-12	5.271663e-8	1.506190e-9
36	214239_x_at	206858_s_at	NM_004503	HOXC6	0.679581	1.183978e-12	5.474005e-8	1.520557e-9
37	214239_x_at	203571_s_at	NM_006829	C10orf116	0.679285	1.221279e-12	5.646462e-8	1.526071e-9
38	214239_x_at	225188_at	AA194149	RAPH1	0.679144	1.239403e-12	5.730255e-8	1.507962e-9
39	214239_x_at	225021_at	AA861416	ZNF532	0.678445	1.333414e-12	6.164904e-8	1.580745e-9
40	214239_x_at	204041_at	NM_000898	MAOB	0.676750	1.590919e-12	7.355454e-8	1.838863e-9
41	214239_x_at	203038_at	NM_002844	PTPRK	0.675856	1.745352e-12	8.069461e-8	1.968161e-9
42	214239_x_at	213029_at	BG478428	NFIB	0.675229	1.862150e-12	8.609465e-8	2.049873e-9
43	214239_x_at	204359_at	NM_013231	FLRT2	0.673847	2.146595e-12	9.924569e-8	2.308039e-9
44	214239_x_at	209487_at	D84109	RBPMS	0.673690	2.181448e-12	1.008571e-7	2.292206e-9
45	214239_x_at	210139_s_at	L03203	PMP22	0.673495	2.225473e-12	1.028925e-7	2.286501e-9
46	214239_x_at	203323_at	BF197655	CAV2	0.672105	2.565414e-12	1.186094e-7	2.578465e-9
47	214239_x_at	218736_s_at	NM_017734	PALMD	0.671441	2.744825e-12	1.269042e-7	2.700090e-9
48	214239_x_at	208789_at	BC004295	PTRF	0.671376	2.763023e-12	1.277456e-7	2.661367e-9
49	214239_x_at	216331_at	AK022548	ITGA7	0.670051	3.160071e-12	1.461027e-7	2.981688e-9
50	214239_x_at	201348_at	NM_002084	GPX3	0.668349	3.751530e-12	1.734482e-7	3.468965e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser 2.0: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation