[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 1004.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1004	8161381	AL833349	FAM95B1		family with sequence similarity 95, member B1

Fetching correlation data, please wait...
Getting list of correlations for id 1004.
Getting list of p-values for id 1004.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.110 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8161381	8155627	AL833349	FAM95B1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8161381	7951987	NM_001077263	TMPRSS13	0.657138	2.673763e-14	4.632830e-10	2.316415e-10
3	8161381	7903632	NM_001408	CELSR2	0.640712	1.826130e-13	3.164135e-9	1.054712e-9
4	8161381	7913450	NM_005529	HSPG2	0.627177	8.169535e-13	1.415535e-8	3.538838e-9
5	8161381	7936144	NM_000494	COL17A1	0.625057	1.026260e-12	1.778201e-8	3.556401e-9
6	8161381	7942717	NM_000260	MYO7A	0.620665	1.637276e-12	2.836907e-8	4.728179e-9
7	8161381	7973652	NM_174944	TSSK4	0.620258	1.709114e-12	2.961382e-8	4.230545e-9
8	8161381	7961320	NM_006248	PRB2	0.619289	1.892389e-12	3.278943e-8	4.098679e-9
9	8161381	7946860	NM_000352	ABCC8	0.618943	1.962454e-12	3.400343e-8	3.778159e-9
10	8161381	8045030	NM_001080527	MYO7B	0.616527	2.525704e-12	4.376288e-8	4.376288e-9
11	8161381	7987701	NM_016642	SPTBN5	0.616357	2.570746e-12	4.454331e-8	4.049392e-9
12	8161381	8102695			0.615384	2.843843e-12	4.927527e-8	4.106272e-9
13	8161381	7936762	NM_001001976	ATE1	-0.614926	2.981634e-12	5.166277e-8	3.974059e-9
14	8161381	8087481	NM_001007540	CDHR4	0.612139	3.972197e-12	6.882626e-8	4.916161e-9
15	8161381	8071745	NM_182520	C22orf15	0.610985	4.469321e-12	7.743993e-8	5.162662e-9
16	8161381	8062064	NM_020884	MYH7B	0.608088	5.996400e-12	1.038996e-7	6.493726e-9
17	8161381	8092473	NM_004366	CLCN2	0.607313	6.483542e-12	1.123403e-7	6.608255e-9
18	8161381	8046922	NM_000090	COL3A1	0.606869	6.779902e-12	1.174754e-7	6.526409e-9
19	8161381	7947540	NM_145803	TRAF6	-0.605466	7.803813e-12	1.352167e-7	7.116667e-9
20	8161381	8034469	NM_032301	FBXW9	0.605444	7.821114e-12	1.355164e-7	6.775822e-9
21	8161381	7992954	AK098732	TRAP1	0.605255	7.970004e-12	1.380963e-7	6.576012e-9
22	8161381	7914667	NM_052896	CSMD2	0.604559	8.544011e-12	1.480421e-7	6.729185e-9
23	8161381	8156247	NM_178828	C9orf79	0.603333	9.651921e-12	1.672388e-7	7.271254e-9
24	8161381	8165416	NM_203468	ENTPD2	0.603017	9.959686e-12	1.725715e-7	7.190478e-9
25	8161381	7904927	NM_005267	GJA8	0.602154	1.084797e-11	1.879628e-7	7.518513e-9
26	8161381	7990283	NM_001038640	GOLGA6A	0.601714	1.133009e-11	1.963165e-7	7.550634e-9
27	8161381	7972743	ENST00000411245		0.601111	1.202501e-11	2.083574e-7	7.716941e-9
28	8161381	8038770	NM_022046	KLK14	0.600793	1.240737e-11	2.149825e-7	7.677948e-9
29	8161381	8043114	NM_031283	TCF7L1	0.599984	1.343420e-11	2.327743e-7	8.026701e-9
30	8161381	8176669	ENST00000384790		0.599584	1.397085e-11	2.420729e-7	8.069096e-9
31	8161381	8177189	ENST00000384790		0.599584	1.397085e-11	2.420729e-7	7.808803e-9
32	8161381	8053610	NM_022662	ANAPC1	-0.598708	1.522200e-11	2.637516e-7	8.242239e-9
33	8161381	7984662	NM_018652	GOLGA6B	0.597724	1.675578e-11	2.903275e-7	8.797802e-9
34	8161381	8067530	BC093856	C20orf200	0.597642	1.688950e-11	2.926444e-7	8.607187e-9
35	8161381	8066921	NM_004975	KCNB1	0.597281	1.749326e-11	3.031057e-7	8.660164e-9
36	8161381	8157698	NM_080859	OR1K1	0.597186	1.765620e-11	3.059289e-7	8.498026e-9
37	8161381	8082928	NM_001002026	CLDN18	0.596378	1.909511e-11	3.308610e-7	8.942189e-9
38	8161381	7970241	NM_000504	F10	0.595174	2.145356e-11	3.717258e-7	9.782257e-9
39	8161381	7898357	NM_020998	MST1	0.594658	2.254991e-11	3.907223e-7	1.001852e-8
40	8161381	7985130	NM_001101404	SH2D7	0.594386	2.314695e-11	4.010672e-7	1.002668e-8
41	8161381	8059028	NM_194302	CCDC108	0.594371	2.318188e-11	4.016724e-7	9.796889e-9
42	8161381	8038487	NM_172374	IL4I1	0.593817	2.445057e-11	4.236550e-7	1.008702e-8
43	8161381	8118124	NM_001011700	MCCD1	0.593794	2.450412e-11	4.245828e-7	9.874019e-9
44	8161381	8064539	NM_019609	CPXM1	0.592845	2.683841e-11	4.650291e-7	1.056884e-8
45	8161381	7983663	NM_005154	USP8	-0.592782	2.700032e-11	4.678345e-7	1.039632e-8
46	8161381	8132270	NM_207172	NPSR1	0.592537	2.764178e-11	4.789491e-7	1.041194e-8
47	8161381	8004556	NM_018081	WRAP53	0.592400	2.800488e-11	4.852405e-7	1.032427e-8
48	8161381	8028325	NM_033520	C19orf33	0.591499	3.052050e-11	5.288287e-7	1.101726e-8
49	8161381	8033674	NM_024690	MUC16	0.590784	3.267011e-11	5.660750e-7	1.155255e-8
50	8161381	7914282	NM_014654	SDC3	0.590008	3.516994e-11	6.093895e-7	1.218779e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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