[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
9256	8177964	NM_001011700	MCCD1		mitochondrial coiled-coil domain 1
9257	8179246	NM_001011700	MCCD1		mitochondrial coiled-coil domain 1
10787	8118124	NM_001011700	MCCD1		mitochondrial coiled-coil domain 1

Fetching correlation data, please wait...
Getting list of correlations for id 9256.
Getting list of p-values for id 9256.
1 of 3 done.
Getting list of correlations for id 9257.
Getting list of p-values for id 9257.
2 of 3 done.
Getting list of correlations for id 10787.
Getting list of p-values for id 10787.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.319 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177964	8179246	NM_001011700	MCCD1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179246	8177964	NM_001011700	MCCD1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8118124	8179246	NM_001011700	MCCD1	0.956868	4.175254e-57	2.170339e-52	7.234462e-53
4	8177964	8118124	NM_001011700	MCCD1	0.956868	4.175254e-57	2.170339e-52	5.425846e-53
5	8118124	8177964	NM_001011700	MCCD1	0.956868	4.175254e-57	2.170339e-52	4.340677e-53
6	8179246	8118124	NM_001011700	MCCD1	0.956868	4.175254e-57	2.170339e-52	3.617231e-53
7	8118124	8019585	NM_030966	KRTAP1-3	0.723936	2.654009e-18	1.379580e-13	1.970829e-14
8	8118124	8015189	NM_030966	KRTAP1-3	0.723936	2.654009e-18	1.379580e-13	1.724475e-14
9	8118124	8019578	NM_030967	KRTAP1-1	0.719728	5.129671e-18	2.666455e-13	2.962727e-14
10	8118124	8015196	NM_030967	KRTAP1-1	0.719728	5.129671e-18	2.666455e-13	2.666455e-14
11	8118124	7987701	NM_016642	SPTBN5	0.719467	5.341566e-18	2.776600e-13	2.524181e-14
12	8118124	8102695			0.698290	1.232235e-16	6.405283e-12	5.337736e-13
13	8118124	8049729	NM_198998	AQP12A	0.697892	1.303526e-16	6.775857e-12	5.212198e-13
14	8118124	8007537	NM_145273	CD300LG	0.696991	1.480457e-16	7.695564e-12	5.496831e-13
15	8118124	8079131	NM_001129908	FAM198A	0.695947	1.714700e-16	8.913183e-12	5.942122e-13
16	8118124	7977978	NM_005864	EFS	0.692953	2.604058e-16	1.353615e-11	8.460097e-13
17	8118124	8165416	NM_203468	ENTPD2	0.692793	2.662455e-16	1.383971e-11	8.141004e-13
18	8118124	8179716	NM_001264	CDSN	0.692669	2.708594e-16	1.407954e-11	7.821968e-13
19	8118124	7997880	NM_004933	CDH15	0.691083	3.371806e-16	1.752699e-11	9.224729e-13
20	8118124	7992140	ENST00000455256		0.686270	6.498578e-16	3.378026e-11	1.689013e-12
21	8118124	8010768			0.685534	7.176526e-16	3.730430e-11	1.776395e-12
22	8118124	8001046	NM_001136509	ZNF843	0.685337	7.369444e-16	3.830710e-11	1.741232e-12
23	8118124	7936144	NM_000494	COL17A1	0.684354	8.409308e-16	4.371243e-11	1.900540e-12
24	8179246	8015196	NM_030967	KRTAP1-1	0.683880	8.959865e-16	4.657427e-11	1.940595e-12
25	8179246	8019578	NM_030967	KRTAP1-1	0.683880	8.959865e-16	4.657427e-11	1.862971e-12
26	8177964	8015196	NM_030967	KRTAP1-1	0.683880	8.959865e-16	4.657427e-11	1.791318e-12
27	8177964	8019578	NM_030967	KRTAP1-1	0.683880	8.959865e-16	4.657427e-11	1.724973e-12
28	8118124	7933498	ENST00000311787		0.683734	9.136459e-16	4.749223e-11	1.696151e-12
29	8118124	7995334			0.683499	9.428077e-16	4.900809e-11	1.689934e-12
30	8118124	8037688	NM_030785	RSPH6A	0.683164	9.859460e-16	5.125046e-11	1.708349e-12
31	8118124	8046922	NM_000090	COL3A1	0.682718	1.046199e-15	5.438248e-11	1.754273e-12
32	8118124	8001014	NM_173502	PRSS36	0.682210	1.119362e-15	5.818556e-11	1.818299e-12
33	8118124	7929664	NM_138413	DHDPSL	0.678845	1.745229e-15	9.071874e-11	2.749053e-12
34	8118124	7951987	NM_001077263	TMPRSS13	0.677554	2.066048e-15	1.073952e-10	3.158684e-12
35	8118124	8126556	NM_023932	DLK2	0.677319	2.130506e-15	1.107458e-10	3.164166e-12
36	8118124	7915598	NM_153274	BEST4	0.675891	2.564688e-15	1.333150e-10	3.703195e-12
37	8118124	8067530	BC093856	C20orf200	0.675585	2.668411e-15	1.387067e-10	3.748829e-12
38	8118124	8157804	NM_182487	OLFML2A	0.673363	3.553227e-15	1.847003e-10	4.860534e-12
39	8118124	7900352	NM_022120	OXCT2	0.673322	3.572127e-15	1.856827e-10	4.761096e-12
40	8118124	7915257	NM_022120	OXCT2	0.673322	3.572127e-15	1.856827e-10	4.642069e-12
41	8118124	7923360	NM_003281	TNNI1	0.671253	4.652928e-15	2.418639e-10	5.899119e-12
42	8118124	7959234	NM_000545	HNF1A	0.669490	5.819072e-15	3.024812e-10	7.201933e-12
43	8118124	8124862	NM_001264	CDSN	0.669141	6.081564e-15	3.161258e-10	7.351762e-12
44	8118124	7923929	NM_002644	PIGR	0.669098	6.114097e-15	3.178169e-10	7.223111e-12
45	8179246	7987701	NM_016642	SPTBN5	0.667858	7.147081e-15	3.715124e-10	8.255831e-12
46	8177964	7987701	NM_016642	SPTBN5	0.667858	7.147081e-15	3.715124e-10	8.076357e-12
47	8118124	8034469	NM_032301	FBXW9	0.667315	7.651197e-15	3.977169e-10	8.462061e-12
48	8118124	7918913	NM_001542	IGSF3	0.666811	8.150304e-15	4.236610e-10	8.826270e-12
49	8118124	7913450	NM_005529	HSPG2	0.666569	8.400153e-15	4.366483e-10	8.911191e-12
50	8118124	7963142	NM_012306	FAIM2	0.666082	8.926897e-15	4.640290e-10	9.280581e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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