[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 9257.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
9257	8179246	NM_001011700	MCCD1		mitochondrial coiled-coil domain 1

Fetching correlation data, please wait...
Getting list of correlations for id 9257.
Getting list of p-values for id 9257.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.093 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179246	8177964	NM_001011700	MCCD1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179246	8118124	NM_001011700	MCCD1	0.956868	4.175254e-57	7.234462e-53	3.617231e-53
3	8179246	8019578	NM_030967	KRTAP1-1	0.683880	8.959865e-16	1.552476e-11	5.174919e-12
4	8179246	8015196	NM_030967	KRTAP1-1	0.683880	8.959865e-16	1.552476e-11	3.881190e-12
5	8179246	7987701	NM_016642	SPTBN5	0.667858	7.147081e-15	1.238375e-10	2.476749e-11
6	8179246	8019585	NM_030966	KRTAP1-3	0.654884	3.504884e-14	6.072912e-10	1.012152e-10
7	8179246	8015189	NM_030966	KRTAP1-3	0.654884	3.504884e-14	6.072912e-10	8.675589e-11
8	8179246	7936144	NM_000494	COL17A1	0.650908	5.618325e-14	9.734871e-10	1.216859e-10
9	8179246	7923929	NM_002644	PIGR	0.646644	9.247727e-14	1.602354e-9	1.780393e-10
10	8179246	8049729	NM_198998	AQP12A	0.646248	9.682291e-14	1.677651e-9	1.677651e-10
11	8179246	7915598	NM_153274	BEST4	0.646038	9.919975e-14	1.718834e-9	1.562576e-10
12	8179246	8060790	AK090863	FLJ33544	0.641384	1.691915e-13	2.931581e-9	2.442984e-10
13	8179246	8046922	NM_000090	COL3A1	0.640926	1.782226e-13	3.088063e-9	2.375433e-10
14	8179246	8102695			0.640684	1.831920e-13	3.174167e-9	2.267262e-10
15	8179246	7995334			0.640547	1.860624e-13	3.223904e-9	2.149269e-10
16	8179246	7915257	NM_022120	OXCT2	0.640363	1.899857e-13	3.291882e-9	2.057426e-10
17	8179246	7900352	NM_022120	OXCT2	0.640363	1.899857e-13	3.291882e-9	1.936401e-10
18	8179246	7918913	NM_001542	IGSF3	0.638974	2.222565e-13	3.851039e-9	2.139466e-10
19	8179246	7959921	AK098523	LOC338797	0.638869	2.249112e-13	3.897037e-9	2.051072e-10
20	8179246	8037688	NM_030785	RSPH6A	0.637509	2.620696e-13	4.540880e-9	2.270440e-10
21	8179246	8179716	NM_001264	CDSN	0.637341	2.670355e-13	4.626924e-9	2.203297e-10
22	8179246	8010768			0.636224	3.025856e-13	5.242901e-9	2.383137e-10
23	8179246	7955896	NM_016057	COPZ1	-0.635938	3.123668e-13	5.412379e-9	2.353208e-10
24	8179246	8007537	NM_145273	CD300LG	0.634816	3.539173e-13	6.132326e-9	2.555136e-10
25	8179246	8134907	NM_000799	EPO	0.633619	4.040866e-13	7.001608e-9	2.800643e-10
26	8179246	8001046	NM_001136509	ZNF843	0.632307	4.669932e-13	8.091592e-9	3.112151e-10
27	8179246	8001014	NM_173502	PRSS36	0.631760	4.959548e-13	8.593408e-9	3.182744e-10
28	8179246	7992032	ENST00000397621		0.631271	5.232705e-13	9.066708e-9	3.238110e-10
29	8179246	7906307	NM_018240	KIRREL	0.628984	6.716596e-13	1.163785e-8	4.013050e-10
30	8179246	7977978	NM_005864	EFS	0.628609	6.996276e-13	1.212245e-8	4.040816e-10
31	8179246	8079131	NM_001129908	FAM198A	0.625561	9.722717e-13	1.684655e-8	5.434371e-10
32	8179246	8124862	NM_001264	CDSN	0.624926	1.040748e-12	1.803304e-8	5.635326e-10
33	8179246	7977567	BC146951	KLHL33	0.624733	1.062483e-12	1.840965e-8	5.578681e-10
34	8179246	7989718	NM_016563	RASL12	0.624199	1.125012e-12	1.949308e-8	5.733259e-10
35	8179246	8149725	NM_144962	PEBP4	0.623921	1.158816e-12	2.007880e-8	5.736801e-10
36	8179246	7935230	NM_002860	ALDH18A1	-0.623702	1.186275e-12	2.055458e-8	5.709606e-10
37	8179246	7933498	ENST00000311787		0.622243	1.385528e-12	2.400704e-8	6.488390e-10
38	8179246	8116195	NM_173465	COL23A1	0.621464	1.504712e-12	2.607215e-8	6.861092e-10
39	8179246	8049509	NM_015893	PRLH	0.620795	1.614972e-12	2.798263e-8	7.175033e-10
40	8179246	7999291	NM_152459	C16orf89	0.620748	1.622980e-12	2.812138e-8	7.030345e-10
41	8179246	7923360	NM_003281	TNNI1	0.620578	1.652328e-12	2.862989e-8	6.982899e-10
42	8179246	8175455	hsa-mir-504		0.617865	2.196785e-12	3.806369e-8	9.062783e-10
43	8179246	8162247	AF289567		0.616709	2.478169e-12	4.293924e-8	9.985869e-10
44	8179246	7963142	NM_012306	FAIM2	0.616644	2.495014e-12	4.323111e-8	9.825252e-10
45	8179246	7966542	NM_004658	RASAL1	0.616487	2.536187e-12	4.394451e-8	9.765446e-10
46	8179246	7929664	NM_138413	DHDPSL	0.615682	2.757350e-12	4.777660e-8	1.038622e-9
47	8179246	8026212	hsa-mir-181c		0.614663	3.063929e-12	5.308869e-8	1.129547e-9
48	8179246	8066451	NM_182970	RIMS4	0.614454	3.130740e-12	5.424633e-8	1.130132e-9
49	8179246	8126556	NM_023932	DLK2	0.613902	3.314287e-12	5.742665e-8	1.171972e-9
50	8179246	7989887	NM_032445	MEGF11	0.613843	3.334461e-12	5.777620e-8	1.155524e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation