[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12177.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12177	8000649	ENST00000458775

Fetching correlation data, please wait...
Getting list of correlations for id 12177.
Getting list of p-values for id 12177.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8000649	8000690	ENST00000458775		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8000649	8002342	ENST00000458775		0.972727	3.489928e-67	6.046997e-63	3.023499e-63
3	8000649	7994006	NM_015092	SMG1	0.869362	2.652563e-33	4.596097e-29	1.532032e-29
4	8000649	8000156	ENST00000446231		0.866968	6.344871e-33	1.099376e-28	2.748440e-29
5	8000649	7993999	NM_015092	SMG1	0.856177	2.645210e-31	4.583355e-27	9.166710e-28
6	8000649	8000222	NM_015092	SMG1	0.856177	2.645210e-31	4.583355e-27	7.638925e-28
7	8000649	8000217	NM_015092	SMG1	0.852765	8.080571e-31	1.400121e-26	2.000172e-27
8	8000649	8000167	NM_015092	SMG1	0.852522	8.739864e-31	1.514356e-26	1.892945e-27
9	8000649	7999884	ENST00000459248		0.846869	5.215085e-30	9.036178e-26	1.004020e-26
10	8000649	8002333	NM_015092	SMG1	0.844492	1.081746e-29	1.874342e-25	1.874342e-26
11	8000649	8000823	NM_015092	SMG1	0.844398	1.113245e-29	1.928920e-25	1.753563e-26
12	8000649	8000651	NM_015092	SMG1	0.842761	1.826522e-29	3.164815e-25	2.637346e-26
13	8000649	8166956	NM_021140	KDM6A	0.839255	5.175378e-29	8.967378e-25	6.897983e-26
14	8000649	8083445	ENST00000364347		0.839200	5.260811e-29	9.115407e-25	6.511005e-26
15	8000649	8101228	NM_144571	CNOT6L	0.838214	7.017651e-29	1.215948e-24	8.106323e-26
16	8000649	8000834	NM_015092	SMG1	0.836800	1.057692e-28	1.832663e-24	1.145414e-25
17	8000649	7989806	NM_197960	DPP8	0.836642	1.106945e-28	1.918004e-24	1.128238e-25
18	8000649	8151149	NM_006421	ARFGEF1	0.835167	1.690281e-28	2.928749e-24	1.627083e-25
19	8000649	7946610	NM_001418	EIF4G2	0.834798	1.877949e-28	3.253922e-24	1.712591e-25
20	8000649	8000638	NM_015092	SMG1	0.833217	2.939196e-28	5.092745e-24	2.546372e-25
21	8000649	8168316	NM_181672	OGT	0.833173	2.976088e-28	5.156668e-24	2.455556e-25
22	8000649	8006377	NM_001098507	ZNF207	0.832590	3.506401e-28	6.075541e-24	2.761610e-25
23	8000649	7929201	NM_003972	BTAF1	0.828790	1.005427e-27	1.742104e-23	7.574366e-25
24	8000649	8079021	NM_001904	CTNNB1	0.827967	1.258780e-27	2.181088e-23	9.087868e-25
25	8000649	7974771	NM_022495	C14orf135	0.826832	1.712768e-27	2.967713e-23	1.187085e-24
26	8000649	8133914	NR_024549	DMTF1	0.825248	2.622727e-27	4.544398e-23	1.747846e-24
27	8000649	8020267	NM_032142	CEP192	0.824974	2.822122e-27	4.889891e-23	1.811071e-24
28	8000649	7930454	NM_145341	PDCD4	0.824666	3.063935e-27	5.308880e-23	1.896028e-24
29	8000649	7989387	NM_020821	VPS13C	0.823388	4.302642e-27	7.455188e-23	2.570755e-24
30	8000649	8045381	NM_058241	CCNT2	0.823373	4.319941e-27	7.485161e-23	2.495054e-24
31	8000649	7916185	NM_001009881	ZCCHC11	0.821640	6.815325e-27	1.180891e-22	3.809327e-24
32	8000649	8156167	NM_024635	NAA35	0.821521	7.030784e-27	1.218224e-22	3.806950e-24
33	8000649	8079079	NM_005385	NKTR	0.820806	8.471607e-27	1.467875e-22	4.448107e-24
34	8000649	8107066	NM_005575	LNPEP	0.820139	1.007578e-26	1.745831e-22	5.134797e-24
35	8000649	8098512	NM_021942	C4orf41	0.819290	1.254692e-26	2.174004e-22	6.211441e-24
36	8000649	8105191	NM_024615	PARP8	0.819079	1.324935e-26	2.295716e-22	6.376988e-24
37	8000649	8051670	NM_005633	SOS1	0.818466	1.551024e-26	2.687459e-22	7.263403e-24
38	8000649	7968333	NM_005800	USPL1	0.817327	2.075277e-26	3.595832e-22	9.462716e-24
39	8000649	7956697	NM_015026	MON2	0.817232	2.126240e-26	3.684136e-22	9.446503e-24
40	8000649	8083094	NM_006506	RASA2	0.815710	3.126642e-26	5.417532e-22	1.354383e-23
41	8000649	8056909	NM_001880	ATF2	0.815562	3.245535e-26	5.623538e-22	1.371595e-23
42	8000649	7966343	ENST00000365465		0.814996	3.742584e-26	6.484775e-22	1.543994e-23
43	8000649	8043697	NM_025190	ANKRD36B	0.814137	4.641621e-26	8.042537e-22	1.870357e-23
44	8000649	8128394	NM_032870	SFRS18	0.813613	5.289731e-26	9.165517e-22	2.083072e-23
45	8000649	8106784	NM_002890	RASA1	0.813067	6.059270e-26	1.049890e-21	2.333088e-23
46	8000649	7968761	NM_024561	NAA16	0.812921	6.281606e-26	1.088414e-21	2.366117e-23
47	8000649	8106534	NM_001114394	PAPD4	0.812681	6.668224e-26	1.155403e-21	2.458304e-23
48	8000649	8052443	NM_014709	USP34	0.811541	8.834331e-26	1.530725e-21	3.189010e-23
49	8000649	7939434	NM_018259	TTC17	0.809927	1.311805e-25	2.272964e-21	4.638702e-23
50	8000649	8052845	NM_022173	TIA1	0.809605	1.418512e-25	2.457856e-21	4.915712e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation