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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 12780.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
12780 8014376 NM_001001417 TBC1D3B link to infopage TBC1 domain family, member 3B

Fetching correlation data, please wait...
Getting list of correlations for id 12780.
Getting list of p-values for id 12780.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8014376 8019655 NM_001001417 TBC1D3B link to infopage 0.995160 1.306683e-105 2.264090e-101 2.264090e-101
2 8014376 8014397 NM_001001418 TBC1D3C link to infopage 0.976915 7.239069e-71 1.254314e-66 6.271568e-67
3 8014376 8014437 NM_001040282 TBC1D3G link to infopage 0.974518 1.102389e-68 1.910110e-64 6.367034e-65
4 8014376 8019716 NM_001040282 TBC1D3G link to infopage 0.969356 1.294243e-64 2.242535e-60 5.606338e-61
5 8014376 8014420 NM_001123390 link to infopage 0.968274 7.520801e-64 1.303129e-59 2.606258e-60
6 8014376 8014633 NM_001123390 link to infopage 0.938236 2.791330e-49 4.836537e-45 8.060895e-46
7 8014376 8006746 NM_001123391 TBC1D3 link to infopage 0.924380 6.586879e-45 1.141308e-40 1.630441e-41
8 8014376 8014603 NM_001123391 TBC1D3 link to infopage 0.923886 9.092575e-45 1.575470e-40 1.969338e-41
9 8014376 8017173 NR_027486 TBC1D3P2 link to infopage 0.787514 2.208435e-23 3.826555e-19 4.251728e-20
10 8014376 8017346 NR_027486 TBC1D3P2 link to infopage 0.720075 4.860122e-18 8.421133e-14 8.421133e-15
11 8014376 7963590 NM_015989 CSAD link to infopage 0.695974 1.708277e-16 2.959932e-12 2.690847e-13
12 8014376 7987475 NM_004573 PLCB2 link to infopage 0.676811 2.275986e-15 3.943601e-11 3.286334e-12
13 8014376 8178955 NM_004761 RGL2 link to infopage 0.654514 3.663606e-14 6.347929e-10 4.883023e-11
14 8014376 8180144 NM_004761 RGL2 link to infopage 0.654514 3.663606e-14 6.347929e-10 4.534235e-11
15 8014376 8125687 NM_004761 RGL2 link to infopage 0.646052 9.904688e-14 1.716185e-9 1.144123e-10
16 8014376 8031992 NR_024368 FLJ45340 link to infopage 0.635222 3.383013e-13 5.861746e-9 3.663591e-10
17 8014376 8148476 NM_014957 DENND3 link to infopage 0.629614 6.271613e-13 1.086682e-8 6.392249e-10
18 8014376 8026926 NM_015016 MAST3 link to infopage 0.627909 7.547781e-13 1.307804e-8 7.265578e-10
19 8014376 7942381 NM_033388 ATG16L2 link to infopage 0.624466 1.093256e-12 1.894285e-8 9.969923e-10
20 8014376 7945344 NR_024368 FLJ45340 link to infopage 0.623227 1.247826e-12 2.162108e-8 1.081054e-9
21 8014376 7964360 NM_003153 STAT6 link to infopage 0.619919 1.771117e-12 3.068815e-8 1.461340e-9
22 8014376 7995128 NM_000887 ITGAX link to infopage 0.619131 1.924175e-12 3.334019e-8 1.515463e-9
23 8014376 8077612 NM_001025930 TTLL3 link to infopage 0.612106 3.985543e-12 6.905751e-8 3.002500e-9
24 8014376 8035703 NM_004720 LPAR2 link to infopage 0.608963 5.488795e-12 9.510434e-8 3.962681e-9
25 8014376 7944667 NM_003105 SORL1 link to infopage 0.608124 5.974689e-12 1.035234e-7 4.140938e-9
26 8014376 7940582 NM_004183 BEST1 link to infopage 0.607903 6.109327e-12 1.058563e-7 4.071397e-9
27 8014376 8043993 AY358263 LOC100131131 link to infopage 0.607200 6.557713e-12 1.136255e-7 4.208351e-9
28 8014376 8018449 NM_199242 UNC13D link to infopage 0.607135 6.600999e-12 1.143755e-7 4.084839e-9
29 8014376 8135931 NR_024368 FLJ45340 link to infopage 0.604657 8.460320e-12 1.465920e-7 5.054896e-9
30 8014376 7958207 BC013935 link to infopage 0.598886 1.495884e-11 2.591919e-7 8.639729e-9
31 8014376 7914950 NM_156039 CSF3R link to infopage 0.597246 1.755338e-11 3.041475e-7 9.811210e-9
32 8014376 8048283 NM_000578 SLC11A1 link to infopage 0.597246 1.755349e-11 3.041493e-7 9.504665e-9
33 8014376 8162231 NM_001142287 SEMA4D link to infopage 0.596410 1.903585e-11 3.298341e-7 9.994973e-9
34 8014376 8168215 NM_005120 MED12 link to infopage 0.594777 2.229295e-11 3.862700e-7 1.136088e-8
35 8014376 8084739 NR_024413 FLJ42393 link to infopage 0.594539 2.280838e-11 3.952008e-7 1.129145e-8
36 8014376 7912166 NM_012102 RERE link to infopage 0.593961 2.411448e-11 4.178317e-7 1.160643e-8
37 8014376 8036503 NM_170604 RASGRP4 link to infopage 0.592740 2.710866e-11 4.697117e-7 1.269491e-8
38 8014376 8033605 NM_012335 MYO1F link to infopage 0.592514 2.770136e-11 4.799815e-7 1.263109e-8
39 8014376 7950197 NM_015242 ARAP1 link to infopage 0.592236 2.844810e-11 4.929203e-7 1.263898e-8
40 8014376 7941985 NM_006019 TCIRG1 link to infopage 0.591556 3.035711e-11 5.259976e-7 1.314994e-8
41 8014376 8026638 NM_004145 MYO9B link to infopage 0.589909 3.550283e-11 6.151575e-7 1.500384e-8
42 8014376 8079462 NM_015175 NBEAL2 link to infopage 0.588265 4.147034e-11 7.185565e-7 1.710849e-8
43 8014376 7927215 NM_000698 ALOX5 link to infopage 0.586954 4.691383e-11 8.128759e-7 1.890409e-8
44 8014376 7927425 NM_020945 WDFY4 link to infopage 0.586314 4.981317e-11 8.631128e-7 1.961620e-8
45 8014376 8118228 NM_021221 LY6G5B link to infopage 0.586173 5.047695e-11 8.746140e-7 1.943587e-8
46 8014376 7993035 NM_016936 UBN1 link to infopage 0.585549 5.350961e-11 9.271610e-7 2.015567e-8
47 8014376 8035714 NM_016573 GMIP link to infopage 0.583330 6.578218e-11 1.139808e-6 2.425123e-8
48 8014376 7956470 NM_052897 MBD6 link to infopage 0.579718 9.175245e-11 1.589795e-6 3.312072e-8
49 8014376 7899253 NM_032283 ZDHHC18 link to infopage 0.578767 1.000868e-10 1.734203e-6 3.539190e-8
50 8014376 8133027 AK128836 LOC100132217 link to infopage 0.578150 1.058804e-10 1.834589e-6 3.669178e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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