[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
12852	8006746	NM_001123391	TBC1D3		TBC1 domain family, member 3
12879	8014603	NM_001123391	TBC1D3		TBC1 domain family, member 3

Fetching correlation data, please wait...
Getting list of correlations for id 12852.
Getting list of p-values for id 12852.
1 of 2 done.
Getting list of correlations for id 12879.
Getting list of p-values for id 12879.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.167 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8014603	8006746	NM_001123391	TBC1D3	0.992001	2.083534e-94	7.220279e-90	7.220279e-90
2	8006746	8014603	NM_001123391	TBC1D3	0.992001	2.083534e-94	7.220279e-90	3.610140e-90
3	8014603	8014633	NM_001123390		0.990333	3.427699e-90	1.187835e-85	3.959450e-86
4	8006746	8014633	NM_001123390		0.984974	2.201234e-80	7.628156e-76	1.907039e-76
5	8014603	8014420	NM_001123390		0.971126	6.319421e-66	2.189932e-61	4.379864e-62
6	8006746	8014420	NM_001123390		0.968881	2.823179e-64	9.783444e-60	1.630574e-60
7	8014603	8019716	NM_001040282	TBC1D3G	0.961930	7.658681e-60	2.654039e-55	3.791485e-56
8	8006746	8019716	NM_001040282	TBC1D3G	0.960601	4.334852e-59	1.502200e-54	1.877749e-55
9	8006746	8014437	NM_001040282	TBC1D3G	0.951121	2.265933e-54	7.852364e-50	8.724848e-51
10	8014603	8014437	NM_001040282	TBC1D3G	0.948646	2.708383e-53	9.385631e-49	9.385631e-50
11	8014603	8014397	NM_001001418	TBC1D3C	0.939196	1.276734e-49	4.424396e-45	4.022178e-46
12	8006746	8014397	NM_001001418	TBC1D3C	0.938367	2.512136e-49	8.705557e-45	7.254631e-46
13	8006746	8014376	NM_001001417	TBC1D3B	0.924380	6.586879e-45	2.282617e-40	1.755859e-41
14	8014603	8014376	NM_001001417	TBC1D3B	0.923886	9.092575e-45	3.150941e-40	2.250672e-41
15	8014603	8019655	NM_001001417	TBC1D3B	0.917906	3.832724e-43	1.328192e-38	8.854615e-40
16	8006746	8019655	NM_001001417	TBC1D3B	0.917596	4.616639e-43	1.599850e-38	9.999063e-40
17	8014603	8017173	NR_027486	TBC1D3P2	0.745365	7.598839e-20	2.633302e-15	1.549001e-16
18	8006746	8017173	NR_027486	TBC1D3P2	0.743903	9.792417e-20	3.393464e-15	1.885258e-16
19	8014603	7987475	NM_004573	PLCB2	0.674994	2.880244e-15	9.981197e-11	5.253261e-12
20	8014603	8033605	NM_012335	MYO1F	0.672929	3.756666e-15	1.301835e-10	6.509175e-12
21	8006746	7987475	NM_004573	PLCB2	0.667219	7.744281e-15	2.683703e-10	1.277954e-11
22	8006746	8033605	NM_012335	MYO1F	0.667081	7.878744e-15	2.730300e-10	1.241045e-11
23	8006746	7944667	NM_003105	SORL1	0.662492	1.392808e-14	4.826637e-10	2.098538e-11
24	8014603	7944667	NM_003105	SORL1	0.660977	1.677295e-14	5.812499e-10	2.421875e-11
25	8014603	7958207	BC013935		0.655108	3.412478e-14	1.182560e-9	4.730240e-11
26	8014603	8017346	NR_027486	TBC1D3P2	0.651207	5.423727e-14	1.879539e-9	7.228994e-11
27	8014603	8071069	NM_014339	IL17RA	0.649697	6.478327e-14	2.245000e-9	8.314813e-11
28	8006746	8031992	NR_024368	FLJ45340	0.648837	7.164268e-14	2.482706e-9	8.866805e-11
29	8006746	8017346	NR_027486	TBC1D3P2	0.648736	7.249456e-14	2.512226e-9	8.662850e-11
30	8006746	7914950	NM_156039	CSF3R	0.647852	8.036444e-14	2.784949e-9	9.283165e-11
31	8014603	8168215	NM_005120	MED12	0.646580	9.316686e-14	3.228604e-9	1.041485e-10
32	8006746	7958207	BC013935		0.644925	1.128030e-13	3.909075e-9	1.221586e-10
33	8014603	8035714	NM_016573	GMIP	0.643711	1.296948e-13	4.494444e-9	1.361953e-10
34	8006746	7899253	NM_032283	ZDHHC18	0.642747	1.448331e-13	5.019048e-9	1.476191e-10
35	8014603	8036503	NM_170604	RASGRP4	0.642264	1.530501e-13	5.303798e-9	1.515371e-10
36	8006746	8036503	NM_170604	RASGRP4	0.640333	1.906316e-13	6.606148e-9	1.835041e-10
37	8014603	8026638	NM_004145	MYO9B	0.640258	1.922519e-13	6.662297e-9	1.800621e-10
38	8014603	8135931	NR_024368	FLJ45340	0.639888	2.004820e-13	6.947503e-9	1.828290e-10
39	8014603	8148476	NM_014957	DENND3	0.638719	2.287543e-13	7.927253e-9	2.032629e-10
40	8014603	8007757	NM_005892	FMNL1	0.637836	2.526329e-13	8.754740e-9	2.188685e-10
41	8006746	8148476	NM_014957	DENND3	0.637266	2.692989e-13	9.332284e-9	2.276167e-10
42	8006746	8035714	NM_016573	GMIP	0.636543	2.919798e-13	1.011827e-8	2.409112e-10
43	8014603	7914950	NM_156039	CSF3R	0.636364	2.978722e-13	1.032246e-8	2.400573e-10
44	8006746	8071069	NM_014339	IL17RA	0.636175	3.042303e-13	1.054280e-8	2.396090e-10
45	8014603	8031992	NR_024368	FLJ45340	0.635938	3.123906e-13	1.082558e-8	2.405685e-10
46	8006746	8135931	NR_024368	FLJ45340	0.635807	3.169796e-13	1.098461e-8	2.387959e-10
47	8006746	8168215	NM_005120	MED12	0.635505	3.278059e-13	1.135979e-8	2.416976e-10
48	8014603	7970162	NM_015205	ATP11A	0.633783	3.968318e-13	1.375181e-8	2.864960e-10
49	8014603	7899253	NM_032283	ZDHHC18	0.631938	4.863685e-13	1.685461e-8	3.439717e-10
50	8014603	8077612	NM_001025930	TTLL3	0.629745	6.182941e-13	2.142637e-8	4.285273e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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