[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12787.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12787	8019716	NM_001040282	TBC1D3G		TBC1 domain family, member 3G

Fetching correlation data, please wait...
Getting list of correlations for id 12787.
Getting list of p-values for id 12787.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.083 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8019716	8014420	NM_001123390		0.995377	1.234685e-106	2.139339e-102	2.139339e-102
2	8019716	8014437	NM_001040282	TBC1D3G	0.992277	3.439018e-95	5.958786e-91	2.979393e-91
3	8019716	8014397	NM_001001418	TBC1D3C	0.972939	2.345248e-67	4.063610e-63	1.354537e-63
4	8019716	8014633	NM_001123390		0.971044	7.303122e-66	1.265412e-61	3.163530e-62
5	8019716	8014376	NM_001001417	TBC1D3B	0.969356	1.294243e-64	2.242535e-60	4.485071e-61
6	8019716	8019655	NM_001001417	TBC1D3B	0.966187	1.898097e-62	3.288832e-58	5.481386e-59
7	8019716	8014603	NM_001123391	TBC1D3	0.961930	7.658681e-60	1.327020e-55	1.895742e-56
8	8019716	8006746	NM_001123391	TBC1D3	0.960601	4.334852e-59	7.510998e-55	9.388747e-56
9	8019716	8017173	NR_027486	TBC1D3P2	0.778792	1.377530e-22	2.386846e-18	2.652051e-19
10	8019716	8017346	NR_027486	TBC1D3P2	0.695123	1.924706e-16	3.334937e-12	3.334937e-13
11	8019716	7987475	NM_004573	PLCB2	0.645540	1.050802e-13	1.820725e-9	1.655204e-10
12	8019716	7963590	NM_015989	CSAD	0.638344	2.385962e-13	4.134156e-9	3.445130e-10
13	8019716	8178955	NM_004761	RGL2	0.628946	6.744457e-13	1.168612e-8	8.989324e-10
14	8019716	8180144	NM_004761	RGL2	0.628946	6.744457e-13	1.168612e-8	8.347229e-10
15	8019716	8135931	NR_024368	FLJ45340	0.621851	1.444334e-12	2.502598e-8	1.668399e-9
16	8019716	8148476	NM_014957	DENND3	0.620541	1.658889e-12	2.874358e-8	1.796474e-9
17	8019716	8125687	NM_004761	RGL2	0.618639	2.026090e-12	3.510605e-8	2.065062e-9
18	8019716	7944667	NM_003105	SORL1	0.616493	2.534535e-12	4.391589e-8	2.439772e-9
19	8019716	8031992	NR_024368	FLJ45340	0.614878	2.996461e-12	5.191968e-8	2.732615e-9
20	8019716	8026926	NM_015016	MAST3	0.614401	3.147835e-12	5.454254e-8	2.727127e-9
21	8019716	7942381	NM_033388	ATG16L2	0.608135	5.968138e-12	1.034099e-7	4.924282e-9
22	8019716	8033605	NM_012335	MYO1F	0.605678	7.639937e-12	1.323772e-7	6.017145e-9
23	8019716	8035714	NM_016573	GMIP	0.605389	7.863705e-12	1.362544e-7	5.924105e-9
24	8019716	8077612	NM_001025930	TTLL3	0.603986	9.045039e-12	1.567234e-7	6.530142e-9
25	8019716	7914950	NM_156039	CSF3R	0.599108	1.463744e-11	2.536229e-7	1.014492e-8
26	8019716	8026638	NM_004145	MYO9B	0.599021	1.476248e-11	2.557894e-7	9.838055e-9
27	8019716	8036503	NM_170604	RASGRP4	0.598331	1.579210e-11	2.736296e-7	1.013443e-8
28	8019716	7945344	NR_024368	FLJ45340	0.595919	1.996409e-11	3.459179e-7	1.235421e-8
29	8019716	7995128	NM_000887	ITGAX	0.595741	2.031016e-11	3.519141e-7	1.213497e-8
30	8019716	7958207	BC013935		0.591909	2.935172e-11	5.085772e-7	1.695257e-8
31	8019716	7899253	NM_032283	ZDHHC18	0.588806	3.940750e-11	6.828137e-7	2.202625e-8
32	8019716	7964360	NM_003153	STAT6	0.587102	4.626670e-11	8.016631e-7	2.505197e-8
33	8019716	8168215	NM_005120	MED12	0.583730	6.338289e-11	1.098235e-6	3.327986e-8
34	8019716	7927215	NM_000698	ALOX5	0.583693	6.360393e-11	1.102065e-6	3.241369e-8
35	8019716	8066848	NM_020820	PREX1	0.581336	7.908606e-11	1.370324e-6	3.915212e-8
36	8019716	7927405	NM_020945	WDFY4	0.581093	8.087523e-11	1.401325e-6	3.892570e-8
37	8019716	7950197	NM_015242	ARAP1	0.580908	8.226199e-11	1.425353e-6	3.852307e-8
38	8019716	7941985	NM_006019	TCIRG1	0.579205	9.616709e-11	1.666287e-6	4.384966e-8
39	8019716	8165947	NM_015691	WWC3	0.577419	1.131593e-10	1.960711e-6	5.027464e-8
40	8019716	7927425	NM_020945	WDFY4	0.577208	1.153531e-10	1.998723e-6	4.996807e-8
41	8019716	8043993	AY358263	LOC100131131	0.575716	1.320438e-10	2.287924e-6	5.580302e-8
42	8019716	8162231	NM_001142287	SEMA4D	0.574921	1.418601e-10	2.458009e-6	5.852403e-8
43	8019716	8071069	NM_014339	IL17RA	0.574468	1.477603e-10	2.560244e-6	5.954055e-8
44	8019716	7940582	NM_004183	BEST1	0.574144	1.521309e-10	2.635972e-6	5.990844e-8
45	8019716	8018449	NM_199242	UNC13D	0.571087	1.999485e-10	3.464508e-6	7.698906e-8
46	8019716	8048283	NM_000578	SLC11A1	0.570497	2.107096e-10	3.650965e-6	7.936880e-8
47	8019716	8039166	NM_024298	MBOAT7	0.568474	2.520060e-10	4.366508e-6	9.290442e-8
48	8019716	8079462	NM_015175	NBEAL2	0.567733	2.690178e-10	4.661272e-6	9.710983e-8
49	8019716	8035703	NM_004720	LPAR2	0.566336	3.040812e-10	5.268815e-6	1.075268e-7
50	8019716	7956470	NM_052897	MBD6	0.564786	3.481501e-10	6.032396e-6	1.206479e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation