[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16424.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16424	7986522	ENST00000423248

Fetching correlation data, please wait...
Getting list of correlations for id 16424.
Getting list of p-values for id 16424.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7986522	7986517	ENST00000423248		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7986522	7986520	AK302717	C15orf51	0.988887	4.336774e-87	7.514329e-83	3.757164e-83
3	7986522	7986527	AK125787		0.983761	1.164827e-78	2.018296e-74	6.727655e-75
4	7986522	7986512	ENST00000426730		0.983761	1.164827e-78	2.018296e-74	5.045741e-75
5	7986522	7986509	ENST00000423248		0.983761	1.164827e-78	2.018296e-74	4.036593e-75
6	7986522	7986515	ENST00000426730		0.922995	1.618915e-44	2.805094e-40	4.675157e-41
7	7986522	7986525	ENST00000426730		0.922995	1.618915e-44	2.805094e-40	4.007277e-41
8	7986522	7986503	NR_003260	C15orf51	0.652213	4.816087e-14	8.344834e-10	1.043104e-10
9	7986522	8075483	NM_052880	PIK3IP1	0.534892	4.153842e-9	7.197361e-5	7.997068e-6
10	7986522	8051422	NR_003143	MYADML	-0.531378	5.473158e-9	9.483341e-5	9.483341e-6
11	7986522	7952601	NM_001143820	ETS1	0.522480	1.085107e-8	1.880165e-4	1.709241e-5
12	7986522	7960933	NM_002355	M6PR	0.519662	1.342258e-8	2.325730e-4	1.938108e-5
13	7986522	8100210	NM_003328	TXK	0.513904	2.060595e-8	3.570393e-4	2.746456e-5
14	7986522	8061136	NM_002823	PTMA	0.513482	2.125576e-8	3.682985e-4	2.630704e-5
15	7986522	8101429	NM_016619	PLAC8	0.512928	2.214057e-8	3.836297e-4	2.557531e-5
16	7986522	8023646	NM_000633	BCL2	0.511301	2.494686e-8	4.322543e-4	2.701589e-5
17	7986522	8109507	NM_005546	ITK	0.506546	3.522652e-8	6.103699e-4	3.590411e-5
18	7986522	8117646	NM_006298	ZNF192	0.503784	4.294357e-8	7.440832e-4	4.133795e-5
19	7986522	7897663	NM_007375	TARDBP	0.501244	5.144171e-8	8.913304e-4	4.691213e-5
20	7986522	8021832	NM_198531	ATP9B	0.497865	6.526798e-8	1.130898e-3	5.654492e-5
21	7986522	8143441	BC012493	KIAA1147	0.497084	6.893354e-8	1.194411e-3	5.687673e-5
22	7986522	8131013	NM_001130965	SUN1	0.494513	8.243968e-8	1.428432e-3	6.492874e-5
23	7986522	7962516	NM_030674	SLC38A1	0.494427	8.293030e-8	1.436933e-3	6.247536e-5
24	7986522	8018803	NM_003016	SRSF2	0.494321	8.354186e-8	1.447530e-3	6.031374e-5
25	7986522	8043743	ENST00000446623		-0.490883	1.058675e-7	1.834367e-3	7.337468e-5
26	7986522	8140196	NM_001025202	STAG3L2	0.488687	1.229854e-7	2.130969e-3	8.196034e-5
27	7986522	7941702	NM_006328	RBM14	0.486336	1.442327e-7	2.499120e-3	9.255999e-5
28	7986522	8139977	NM_001013739	STAG3L3	0.485996	1.475821e-7	2.557155e-3	9.132695e-5
29	7986522	7953111	NM_018463	ITFG2	0.485984	1.477007e-7	2.559209e-3	8.824860e-5
30	7986522	8084717	NM_173216	ST6GAL1	0.484806	1.598839e-7	2.770308e-3	9.234359e-5
31	7986522	8109821	NM_006013	RPL10	0.484793	1.600280e-7	2.772805e-3	8.944534e-5
32	7986522	8087748	NM_014703	VPRBP	0.482475	1.868917e-7	3.238273e-3	1.011960e-4
33	7986522	7963750	NM_012117	CBX5	0.482326	1.887632e-7	3.270700e-3	9.911211e-5
34	7986522	8038086	NM_000979	RPL18	0.477311	2.629931e-7	4.556882e-3	1.340259e-4
35	7986522	8133610	NM_001013739	STAG3L3	0.476415	2.788934e-7	4.832386e-3	1.380682e-4
36	7986522	8110218	NM_001099408	EIF4E1B	-0.475456	2.969363e-7	5.145016e-3	1.429171e-4
37	7986522	8085531	NM_022497	MRPS25	0.472143	3.681283e-7	6.378560e-3	1.723935e-4
38	7986522	8143949	NM_144727	CRYGN	-0.469906	4.251054e-7	7.365801e-3	1.938369e-4
39	7986522	7948679	NM_001404	EEF1G	0.467882	4.837723e-7	8.382323e-3	2.149313e-4
40	7986522	7992092	NM_022092	CHTF18	-0.467752	4.877940e-7	8.452006e-3	2.113001e-4
41	7986522	7939587	BX640618	DKFZp779M0652	-0.465701	5.555741e-7	9.626433e-3	2.347910e-4
42	7986522	7957242	NM_001136262	ATXN7L3B	0.465350	5.680545e-7	9.842681e-3	2.343495e-4
43	7986522	8128138	NM_014611	MDN1	0.463125	6.534208e-7	1.132182e-2	2.632982e-4
44	7986522	8081710	NM_017699	SIDT1	0.463077	6.554005e-7	1.135612e-2	2.580937e-4
45	7986522	8000284	NM_015044	GGA2	0.460069	7.907495e-7	1.370132e-2	3.044737e-4
46	7986522	8021181	NR_003003	SCARNA17	0.459815	8.033145e-7	1.391903e-2	3.025876e-4
47	7986522	8051464	NM_019024	HEATR5B	0.459769	8.056297e-7	1.395915e-2	2.970031e-4
48	7986522	8116012	NM_031300	MXD3	-0.458688	8.614023e-7	1.492552e-2	3.109483e-4
49	7986522	7995421	NM_031490	LONP2	0.458322	8.811396e-7	1.526751e-2	3.115817e-4
50	7986522	7991800	NM_001176	ARHGDIG	-0.458198	8.878871e-7	1.538442e-2	3.076884e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation