[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17219.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17219	7946048	NM_000559	HBG1		hemoglobin, gamma A

Fetching correlation data, please wait...
Getting list of correlations for id 17219.
Getting list of p-values for id 17219.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.056 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7946048	7946054	NM_000559	HBG1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7946048	8151592	NM_001738	CA1	0.613109	3.595994e-12	6.230779e-8	3.115390e-8
3	7946048	8145454	NM_004331	BNIP3L	0.566401	3.023735e-10	5.239226e-6	1.746409e-6
4	7946048	8073334	NM_014248	RBX1	0.565930	3.150898e-10	5.459562e-6	1.364890e-6
5	7946048	7929061	NM_001010987	IFIT1B	0.546663	1.610962e-9	2.791314e-5	5.582627e-6
6	7946048	7995237	NM_016633	AHSP	0.537689	3.327616e-9	5.765760e-5	9.609601e-6
7	7946048	8024436	NM_004152	OAZ1	0.533608	4.596087e-9	7.963641e-5	1.137663e-5
8	7946048	7898894	NM_020362	C1orf128	0.527332	7.489430e-9	1.297693e-4	1.622117e-5
9	7946048	8072113	NM_001013694	SRRD	0.526511	7.977783e-9	1.382310e-4	1.535900e-5
10	7946048	8136341	NM_199186	BPGM	0.525584	8.565617e-9	1.484164e-4	1.484164e-5
11	7946048	7922051	NM_003851	CREG1	0.522191	1.109160e-8	1.921841e-4	1.747128e-5
12	7946048	8168018	NM_173834	YIPF6	0.521479	1.170510e-8	2.028142e-4	1.690118e-5
13	7946048	8018097	NM_001098832	FAM104A	0.520679	1.243314e-8	2.154290e-4	1.657146e-5
14	7946048	7909164	NM_001910	CTSE	0.519742	1.334192e-8	2.311754e-4	1.651253e-5
15	7946048	8128683	NM_003795	SNX3	0.519492	1.359536e-8	2.355667e-4	1.570445e-5
16	7946048	7944623	NM_152715	TBCEL	0.516786	1.664391e-8	2.883890e-4	1.802431e-5
17	7946048	7977736	NM_032846	RAB2B	0.512327	2.313943e-8	4.009370e-4	2.358453e-5
18	7946048	8085263	NM_018447	TMEM111	0.511118	2.528256e-8	4.380710e-4	2.433728e-5
19	7946048	7974461	NR_003225	LGALS3	0.510745	2.598086e-8	4.501703e-4	2.369317e-5
20	7946048	7937993	NM_000184	HBG2	0.504454	4.093433e-8	7.092691e-4	3.546346e-5
21	7946048	7937990	NM_000559	HBG1	0.504454	4.093433e-8	7.092691e-4	3.377472e-5
22	7946048	8102993	NM_002100	GYPB	0.502052	4.857859e-8	8.417213e-4	3.826006e-5
23	7946048	8117034	NM_006877	GMPR	0.500030	5.605128e-8	9.712005e-4	4.222611e-5
24	7946048	8023466	NM_001012515	FECH	0.499309	5.897137e-8	1.021797e-3	4.257487e-5
25	7946048	7946041	NM_000519	HBD	0.494822	8.069106e-8	1.398134e-3	5.592536e-5
26	7946048	7997272	NM_007285	GABARAPL2	0.492769	9.299814e-8	1.611379e-3	6.197611e-5
27	7946048	7901376	NM_014372	RNF11	0.489019	1.202371e-7	2.083349e-3	7.716107e-5
28	7946048	8145281	NM_016612	SLC25A37	0.486918	1.386647e-7	2.402643e-3	8.580866e-5
29	7946048	8065569	NM_138578	BCL2L1	0.485786	1.496854e-7	2.593600e-3	8.943447e-5
30	7946048	8173135	NM_000032	ALAS2	0.484334	1.650400e-7	2.859649e-3	9.532162e-5
31	7946048	7913644	NM_004091	E2F2	0.484040	1.683245e-7	2.916559e-3	9.408255e-5
32	7946048	8021081	NM_001128588	SLC14A1	0.482318	1.888547e-7	3.272285e-3	1.022589e-4
33	7946048	8143387	NM_013446	MKRN1	0.479760	2.238177e-7	3.878090e-3	1.175179e-4
34	7946048	7935588	NM_000195	HPS1	0.479276	2.310956e-7	4.004193e-3	1.177704e-4
35	7946048	8108620	NM_144723	ZMAT2	0.476405	2.790856e-7	4.835717e-3	1.381633e-4
36	7946048	8091452	NM_001079809	TMEM183B	0.472293	3.645822e-7	6.317115e-3	1.754754e-4
37	7946048	8166784	NM_004615	TSPAN7	0.471857	3.749900e-7	6.497452e-3	1.756068e-4
38	7946048	8101762	NM_000345	SNCA	0.470724	4.033729e-7	6.989242e-3	1.839274e-4
39	7946048	7966749	NM_017899	TESC	0.469187	4.451209e-7	7.712610e-3	1.977592e-4
40	7946048	8063478	NM_080821	C20orf108	0.468839	4.551247e-7	7.885945e-3	1.971486e-4
41	7946048	8096663	NM_001008388	CISD2	0.468122	4.764174e-7	8.254885e-3	2.013387e-4
42	7946048	7908867	NM_138391	TMEM183A	0.467811	4.859737e-7	8.420466e-3	2.004873e-4
43	7946048	7988033	NM_000119	EPB42	0.464140	6.130822e-7	1.062288e-2	2.470436e-4
44	7946048	8142886	NM_003344	UBE2H	0.462991	6.589265e-7	1.141722e-2	2.594823e-4
45	7946048	8160756	NM_015397	DCAF12	0.461322	7.314490e-7	1.267382e-2	2.816404e-4
46	7946048	7944560	NM_015313	ARHGEF12	0.460511	7.693402e-7	1.333036e-2	2.897904e-4
47	7946048	8008598	NM_001102402	PCTP	0.458621	8.649995e-7	1.498785e-2	3.188903e-4
48	7946048	8072382	NM_030758	OSBP2	0.458063	8.953442e-7	1.551363e-2	3.232006e-4
49	7946048	7970317	NR_026580	TFDP1	0.456169	1.006032e-6	1.743151e-2	3.557451e-4
50	7946048	8005166	NM_018955	UBB	0.455502	1.047977e-6	1.815830e-2	3.631660e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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