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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
9501 7937990 NM_000559 HBG1 link to infopage hemoglobin, gamma A
17219 7946048 NM_000559 HBG1 link to infopage hemoglobin, gamma A
17220 7946054 NM_000559 HBG1 link to infopage hemoglobin, gamma A

Fetching correlation data, please wait...
Getting list of correlations for id 9501.
Getting list of p-values for id 9501.
1 of 3 done.
Getting list of correlations for id 17219.
Getting list of p-values for id 17219.
2 of 3 done.
Getting list of correlations for id 17220.
Getting list of p-values for id 17220.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.171 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7946054 7946048 NM_000559 HBG1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 7937990 7937993 NM_000184 HBG2 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 7946048 7946054 NM_000559 HBG1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
4 7946048 8151592 NM_001738 CA1 link to infopage 0.613109 3.595994e-12 1.869234e-7 4.673085e-8
5 7946054 8151592 NM_001738 CA1 link to infopage 0.613109 3.595994e-12 1.869234e-7 3.738468e-8
6 7946048 8145454 NM_004331 BNIP3L link to infopage 0.566401 3.023735e-10 1.571768e-5 2.619613e-6
7 7946054 8145454 NM_004331 BNIP3L link to infopage 0.566401 3.023735e-10 1.571768e-5 2.245383e-6
8 7946054 8073334 NM_014248 RBX1 link to infopage 0.565930 3.150898e-10 1.637869e-5 2.047336e-6
9 7946048 8073334 NM_014248 RBX1 link to infopage 0.565930 3.150898e-10 1.637869e-5 1.819854e-6
10 7946054 7929061 NM_001010987 IFIT1B link to infopage 0.546663 1.610962e-9 8.373941e-5 8.373941e-6
11 7946048 7929061 NM_001010987 IFIT1B link to infopage 0.546663 1.610962e-9 8.373941e-5 7.612673e-6
12 7946054 7995237 NM_016633 AHSP link to infopage 0.537689 3.327616e-9 1.729728e-4 1.441440e-5
13 7946048 7995237 NM_016633 AHSP link to infopage 0.537689 3.327616e-9 1.729728e-4 1.330560e-5
14 7946048 8024436 NM_004152 OAZ1 link to infopage 0.533608 4.596087e-9 2.389092e-4 1.706494e-5
15 7946054 8024436 NM_004152 OAZ1 link to infopage 0.533608 4.596087e-9 2.389092e-4 1.592728e-5
16 7946054 7898894 NM_020362 C1orf128 link to infopage 0.527332 7.489430e-9 3.893080e-4 2.433175e-5
17 7946048 7898894 NM_020362 C1orf128 link to infopage 0.527332 7.489430e-9 3.893080e-4 2.290047e-5
18 7946048 8072113 NM_001013694 SRRD link to infopage 0.526511 7.977783e-9 4.146931e-4 2.303851e-5
19 7946054 8072113 NM_001013694 SRRD link to infopage 0.526511 7.977783e-9 4.146931e-4 2.182595e-5
20 7946048 8136341 NM_199186 BPGM link to infopage 0.525584 8.565617e-9 4.452493e-4 2.226247e-5
21 7946054 8136341 NM_199186 BPGM link to infopage 0.525584 8.565617e-9 4.452493e-4 2.120235e-5
22 7946054 7922051 NM_003851 CREG1 link to infopage 0.522191 1.109160e-8 5.765523e-4 2.620692e-5
23 7946048 7922051 NM_003851 CREG1 link to infopage 0.522191 1.109160e-8 5.765523e-4 2.506749e-5
24 7946048 8168018 NM_173834 YIPF6 link to infopage 0.521479 1.170510e-8 6.084426e-4 2.535177e-5
25 7946054 8168018 NM_173834 YIPF6 link to infopage 0.521479 1.170510e-8 6.084426e-4 2.433770e-5
26 7946054 8018097 NM_001098832 FAM104A link to infopage 0.520679 1.243314e-8 6.462870e-4 2.485719e-5
27 7946048 8018097 NM_001098832 FAM104A link to infopage 0.520679 1.243314e-8 6.462870e-4 2.393656e-5
28 7946054 7909164 NM_001910 CTSE link to infopage 0.519742 1.334192e-8 6.935263e-4 2.476880e-5
29 7946048 7909164 NM_001910 CTSE link to infopage 0.519742 1.334192e-8 6.935263e-4 2.391470e-5
30 7946054 8128683 NM_003795 SNX3 link to infopage 0.519492 1.359536e-8 7.067002e-4 2.355667e-5
31 7946048 8128683 NM_003795 SNX3 link to infopage 0.519492 1.359536e-8 7.067002e-4 2.279678e-5
32 7946048 7944623 NM_152715 TBCEL link to infopage 0.516786 1.664391e-8 8.651670e-4 2.703647e-5
33 7946054 7944623 NM_152715 TBCEL link to infopage 0.516786 1.664391e-8 8.651670e-4 2.621718e-5
34 7946054 7977736 NM_032846 RAB2B link to infopage 0.512327 2.313943e-8 1.202811e-3 3.537679e-5
35 7946048 7977736 NM_032846 RAB2B link to infopage 0.512327 2.313943e-8 1.202811e-3 3.436603e-5
36 7946048 8085263 NM_018447 TMEM111 link to infopage 0.511118 2.528256e-8 1.314213e-3 3.650591e-5
37 7946054 8085263 NM_018447 TMEM111 link to infopage 0.511118 2.528256e-8 1.314213e-3 3.551927e-5
38 7946054 7974461 NR_003225 LGALS3 link to infopage 0.510745 2.598086e-8 1.350511e-3 3.553976e-5
39 7946048 7974461 NR_003225 LGALS3 link to infopage 0.510745 2.598086e-8 1.350511e-3 3.462848e-5
40 7946048 7937990 NM_000559 HBG1 link to infopage 0.504454 4.093433e-8 2.127807e-3 5.319518e-5
41 7946048 7937993 NM_000184 HBG2 link to infopage 0.504454 4.093433e-8 2.127807e-3 5.189774e-5
42 7946054 7937990 NM_000559 HBG1 link to infopage 0.504454 4.093433e-8 2.127807e-3 5.066208e-5
43 7946054 7937993 NM_000184 HBG2 link to infopage 0.504454 4.093433e-8 2.127807e-3 4.948389e-5
44 7937990 7946054 NM_000559 HBG1 link to infopage 0.504454 4.093433e-8 2.127807e-3 4.835926e-5
45 7937990 7946048 NM_000559 HBG1 link to infopage 0.504454 4.093433e-8 2.127807e-3 4.728461e-5
46 7946048 8102993 NM_002100 GYPB link to infopage 0.502052 4.857859e-8 2.525164e-3 5.489486e-5
47 7946054 8102993 NM_002100 GYPB link to infopage 0.502052 4.857859e-8 2.525164e-3 5.372689e-5
48 7946054 8117034 NM_006877 GMPR link to infopage 0.500030 5.605128e-8 2.913602e-3 6.070003e-5
49 7946048 8117034 NM_006877 GMPR link to infopage 0.500030 5.605128e-8 2.913602e-3 5.946126e-5
50 7946048 8023466 NM_001012515 FECH link to infopage 0.499309 5.897137e-8 3.065391e-3 6.130782e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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