[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
9502	7937993	NM_000184	HBG2		hemoglobin, gamma G

Fetching correlation data, please wait...
Getting list of correlations for id 9502.
Getting list of p-values for id 9502.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.104 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7937993	7937990	NM_000559	HBG1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7937993	7946054	NM_000559	HBG1	0.504454	4.093433e-8	7.092691e-4	3.546346e-4
3	7937993	7946048	NM_000559	HBG1	0.504454	4.093433e-8	7.092691e-4	2.364230e-4
4	7937993	8170400	ENST00000432041		-0.460160	7.863084e-7	1.362437e-2	3.406091e-3
5	7937993	8097670	NM_172250	MMAA	-0.452613	1.249767e-6	2.165472e-2	4.330944e-3
6	7937993	7900468	NM_001142588	NFYC	-0.441232	2.462149e-6	4.266165e-2	7.110275e-3
7	7937993	7943890	ENST00000416328		-0.441208	2.465589e-6	4.272126e-2	6.103037e-3
8	7937993	8162142	NM_030940	ISCA1	0.435105	3.511537e-6	6.084440e-2	7.605551e-3
9	7937993	7929061	NM_001010987	IFIT1B	0.433430	3.864880e-6	6.696677e-2	7.440753e-3
10	7937993	7904361	NM_017709	FAM46C	0.430109	4.667036e-6	8.086574e-2	8.086574e-3
11	7937993	8173531	NM_018486	HDAC8	-0.428562	5.091857e-6	8.822660e-2	8.020600e-3
12	7937993	8096385	NM_014606	HERC3	-0.426039	5.864424e-6	1.016129e-1	8.467739e-3
13	7937993	7933228	NM_001002265	MARCH8	0.422807	7.015757e-6	1.215620e-1	9.350925e-3
14	7937993	8175638	ENST00000432041		-0.419108	8.594099e-6	1.489099e-1	1.063642e-2
15	7937993	8138789	NM_175061	JAZF1	0.417467	9.396505e-6	1.628132e-1	1.085422e-2
16	7937993	7961279	NM_023922	TAS2R14	-0.417310	9.476907e-6	1.642064e-1	1.026290e-2
17	7937993	8124280	NM_014722	FAM65B	-0.416460	9.923342e-6	1.719417e-1	1.011422e-2
18	7937993	8049530	NM_001137550	LRRFIP1	-0.416010	1.016755e-5	1.761731e-1	9.787392e-3
19	7937993	7975292	NM_002877	RAD51L1	-0.415056	1.070427e-5	1.854729e-1	9.761734e-3
20	7937993	7914750	BC034598	C1orf212	-0.414683	1.092137e-5	1.892345e-1	9.461725e-3
21	7937993	7973813	NM_007077	AP4S1	-0.411119	1.321417e-5	2.289619e-1	1.090295e-2
22	7937993	8063478	NM_080821	C20orf108	0.410626	1.356470e-5	2.350356e-1	1.068344e-2
23	7937993	8005857	NM_152464	TMEM199	-0.410505	1.365228e-5	2.365531e-1	1.028492e-2
24	7937993	8089926	ENST00000410333		-0.408499	1.518032e-5	2.630293e-1	1.095956e-2
25	7937993	8005679	NR_023380	CCDC144C	-0.403512	1.970400e-5	3.414111e-1	1.365645e-2
26	7937993	8156873	NM_014425	INVS	-0.400929	2.251738e-5	3.901586e-1	1.500610e-2
27	7937993	8023466	NM_001012515	FECH	0.399945	2.368564e-5	4.104012e-1	1.520004e-2
28	7937993	7941087	NM_006244	PPP2R5B	0.399434	2.431364e-5	4.212824e-1	1.504580e-2
29	7937993	8100231	NM_003215	TEC	-0.398787	2.513204e-5	4.354628e-1	1.501596e-2
30	7937993	8175177	NM_018388	MBNL3	0.398024	2.612971e-5	4.527495e-1	1.509165e-2
31	7937993	8160953	NM_032634	PIGO	-0.397900	2.629615e-5	4.556333e-1	1.469785e-2
32	7937993	7901376	NM_014372	RNF11	0.393830	3.231213e-5	5.598722e-1	1.749601e-2
33	7937993	7948565	NM_001161454	CYBASC3	-0.393509	3.283883e-5	5.689985e-1	1.724238e-2
34	7937993	7935910	NM_012215	MGEA5	-0.393369	3.306982e-5	5.730008e-1	1.685297e-2
35	7937993	8156601	AL133663	C9orf102	-0.393294	3.319572e-5	5.751823e-1	1.643378e-2
36	7937993	7933634			-0.393185	3.337695e-5	5.783224e-1	1.606451e-2
37	7937993	7964575	AK022448	AVIL	-0.393166	3.340948e-5	5.788861e-1	1.564557e-2
38	7937993	8064216	ENST00000362935		-0.393020	3.365427e-5	5.831275e-1	1.534546e-2
39	7937993	8053975	NM_001142292	LMAN2L	-0.392126	3.519686e-5	6.098561e-1	1.563734e-2
40	7937993	7958989	NM_173542	PLBD2	0.392072	3.529083e-5	6.114842e-1	1.528711e-2
41	7937993	8116245	AK294842	CLK4	-0.391023	3.718965e-5	6.443851e-1	1.571671e-2
42	7937993	8049528	NM_001137550	LRRFIP1	-0.389873	3.937804e-5	6.823034e-1	1.624532e-2
43	7937993	8152053	NM_198401	ANKRD46	-0.389245	4.062394e-5	7.038910e-1	1.636956e-2
44	7937993	7958439	NM_032663	USP30	-0.389113	4.089093e-5	7.085172e-1	1.610266e-2
45	7937993	8165974	NM_001830	CLCN4	-0.388934	4.125620e-5	7.148461e-1	1.588547e-2
46	7937993	8117485	NM_078476	BTN2A1	-0.388176	4.283161e-5	7.421433e-1	1.613355e-2
47	7937993	7999598	NM_173474	NTAN1	0.387911	4.339435e-5	7.518939e-1	1.599774e-2
48	7937993	7920472	NM_152263	TPM3	-0.387728	4.378868e-5	7.587264e-1	1.580680e-2
49	7937993	8021275	NM_007195	POLI	-0.386529	4.645168e-5	8.048683e-1	1.642588e-2
50	7937993	8072382	NM_030758	OSBP2	0.386385	4.678098e-5	8.105741e-1	1.621148e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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