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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 3416.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3416 8140170 NM_173537 GTF2IRD2 link to infopage GTF2I repeat domain containing 2

Fetching correlation data, please wait...
Getting list of correlations for id 3416.
Getting list of p-values for id 3416.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.149 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8140170 8133549 NM_001003795 GTF2IRD2B link to infopage 0.982222 1.187073e-76 2.056841e-72 2.056841e-72
2 8140170 8040985 NM_032434 ZNF512 link to infopage 0.819307 1.249319e-26 2.164695e-22 1.082347e-22
3 8140170 8041149 NM_015131 WDR43 link to infopage 0.809368 1.502713e-25 2.603751e-21 8.679170e-22
4 8140170 7909545 NM_145759 TRAF5 link to infopage 0.796748 2.888492e-24 5.004889e-20 1.251222e-20
5 8140170 8108927 NM_018989 RBM27 link to infopage 0.793022 6.646154e-24 1.151579e-19 2.303158e-20
6 8140170 8145636 NM_024567 HMBOX1 link to infopage 0.786924 2.506474e-23 4.342968e-19 7.238280e-20
7 8140170 8145922 NM_015214 DDHD2 link to infopage 0.785605 3.320877e-23 5.754083e-19 8.220119e-20
8 8140170 8154333 NM_015061 KDM4C link to infopage 0.782016 7.070644e-23 1.225131e-18 1.531413e-19
9 8140170 8066303 NM_032221 CHD6 link to infopage 0.780325 1.004518e-22 1.740528e-18 1.933920e-19
10 8140170 8009205 NM_007372 DDX42 link to infopage 0.779034 1.310779e-22 2.271187e-18 2.271187e-19
11 8140170 7982957 NM_001080541 MGA link to infopage 0.778935 1.337707e-22 2.317844e-18 2.107131e-19
12 8140170 8157534 NM_007018 CEP110 link to infopage 0.778812 1.371845e-22 2.376997e-18 1.980831e-19
13 8140170 8174692 NM_145799 SEPT6 link to infopage 0.773973 3.656054e-22 6.334845e-18 4.872958e-19
14 8140170 7916443 NM_015306 USP24 link to infopage 0.771790 5.645523e-22 9.781997e-18 6.987141e-19
15 8140170 8128138 NM_014611 MDN1 link to infopage 0.767338 1.348778e-21 2.337027e-17 1.558018e-18
16 8140170 7968931 NM_031431 COG3 link to infopage 0.767087 1.415926e-21 2.453376e-17 1.533360e-18
17 8140170 8053834 NM_025190 ANKRD36B link to infopage 0.764005 2.556872e-21 4.430292e-17 2.606054e-18
18 8140170 8051464 NM_019024 HEATR5B link to infopage 0.763770 2.673647e-21 4.632628e-17 2.573682e-18
19 8140170 8162850 NM_017746 TEX10 link to infopage 0.763078 3.048912e-21 5.282850e-17 2.780447e-18
20 8140170 7978449 NM_015382 HECTD1 link to infopage 0.763001 3.093924e-21 5.360842e-17 2.680421e-18
21 8140170 7969935 NM_000123 ERCC5 link to infopage 0.761682 3.968465e-21 6.876160e-17 3.274362e-18
22 8140170 7919251 NM_016334 GPR89B link to infopage 0.760619 4.844351e-21 8.393807e-17 3.815367e-18
23 8140170 7927889 NM_018237 CCAR1 link to infopage 0.759644 5.811373e-21 1.006937e-16 4.377985e-18
24 8140170 7904930 NM_016334 GPR89B link to infopage 0.758710 6.913245e-21 1.197858e-16 4.991075e-18
25 8140170 8122409 NM_003630 PEX3 link to infopage 0.758163 7.649544e-21 1.325436e-16 5.301746e-18
26 8140170 8136401 NM_015135 NUP205 link to infopage 0.757611 8.471375e-21 1.467835e-16 5.645520e-18
27 8140170 8114861 NM_020117 LARS link to infopage 0.755884 1.163364e-20 2.015760e-16 7.465779e-18
28 8140170 7910752 NM_000254 MTR link to infopage 0.755799 1.181594e-20 2.047348e-16 7.311959e-18
29 8140170 8048120 NM_004044 ATIC link to infopage 0.753176 1.903149e-20 3.297587e-16 1.137099e-17
30 8140170 7972190 NM_022118 RBM26 link to infopage 0.753136 1.916627e-20 3.320939e-16 1.106980e-17
31 8140170 7995421 NM_031490 LONP2 link to infopage 0.752668 2.085513e-20 3.613568e-16 1.165667e-17
32 8140170 8116297 NM_005520 HNRNPH1 link to infopage 0.752191 2.272279e-20 3.937178e-16 1.230368e-17
33 8140170 8049799 NM_001001891 ANO7 link to infopage -0.751758 2.456125e-20 4.255727e-16 1.289614e-17
34 8140170 7972069 NM_015057 MYCBP2 link to infopage 0.751730 2.468332e-20 4.276879e-16 1.257906e-17
35 8140170 7970473 NM_022459 XPO4 link to infopage 0.751244 2.693054e-20 4.666254e-16 1.333215e-17
36 8140170 7930380 NM_016824 ADD3 link to infopage 0.749994 3.365432e-20 5.831284e-16 1.619801e-17
37 8140170 7969881 NM_003291 TPP2 link to infopage 0.749640 3.584355e-20 6.210612e-16 1.678544e-17
38 8140170 7904853 NM_001097612 GPR89A link to infopage 0.749057 3.974957e-20 6.887409e-16 1.812476e-17
39 8140170 8053909 NM_014014 SNRNP200 link to infopage 0.748943 4.055376e-20 7.026751e-16 1.801731e-17
40 8140170 8079842 NM_005777 RBM6 link to infopage 0.748535 4.359151e-20 7.553101e-16 1.888275e-17
41 8140170 7925364 NM_018072 HEATR1 link to infopage 0.748520 4.370301e-20 7.572420e-16 1.846932e-17
42 8140170 8144894 NM_018142 INTS10 link to infopage 0.748297 4.545980e-20 7.876820e-16 1.875433e-17
43 8140170 8047641 NM_177538 CYP20A1 link to infopage 0.748295 4.547392e-20 7.879266e-16 1.832388e-17
44 8140170 8116664 NM_003913 PRPF4B link to infopage 0.748222 4.606907e-20 7.982388e-16 1.814179e-17
45 8140170 7963750 NM_012117 CBX5 link to infopage 0.748105 4.703001e-20 8.148890e-16 1.810865e-17
46 8140170 8168316 NM_181672 OGT link to infopage 0.747621 5.121267e-20 8.873620e-16 1.929048e-17
47 8140170 7967881 NM_017520 MPHOSPH8 link to infopage 0.746908 5.804351e-20 1.005720e-15 2.139830e-17
48 8140170 8107474 NM_005509 DMXL1 link to infopage 0.746830 5.884018e-20 1.019524e-15 2.124008e-17
49 8140170 8050367 NM_015909 NBAS link to infopage 0.746316 6.437370e-20 1.115403e-15 2.276333e-17
50 8140170 8046975 NM_032168 WDR75 link to infopage 0.746147 6.630427e-20 1.148854e-15 2.297708e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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