Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
37	hsa-miR-133b	MI0000822			Homo sapiens miR-133b stem-loop

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	hsa-miR-133b	hsa-miR-133a				0.809351	1.509024e-25	2.614686e-21	2.614686e-21
2	hsa-miR-133b	hsa-miR-543	MI0005565			0.481884	1.944001e-7	3.368370e-3	1.684185e-3
3	hsa-miR-133b	hsa-miR-145	MI0000461			0.435943	3.346494e-6	5.798470e-2	1.932823e-2
4	hsa-miR-133b	hsa-miR-485-3p				0.422979	6.949397e-6	1.204122e-1	3.010305e-2
5	hsa-miR-133b	hsa-miR-378a-5p				0.395007	3.045167e-5	5.276360e-1	1.055272e-1
6	hsa-miR-133b	hsa-miR-545	MI0003516			-0.386596	4.629764e-5	8.021992e-1	1.336999e-1
7	hsa-miR-133b	hsa-miR-127-3p				0.382655	5.612241e-5	9.724331e-1	1.389190e-1
8	hsa-miR-133b	hsa-miR-106a	MI0000113			-0.358203	1.755417e-4	3.041612e+0	3.802015e-1
9	hsa-miR-133b	hsa-miR-671-3p				0.358012	1.770509e-4	3.067761e+0	3.408624e-1
10	hsa-miR-133b	hsa-miR-590-5p				-0.356098	1.928374e-4	3.341294e+0	3.341294e-1
11	hsa-miR-133b	hsa-miR-495	MI0003135			0.355366	1.992068e-4	3.451657e+0	3.137870e-1
12	hsa-miR-133b	hsa-miR-502-3p				0.350108	2.510570e-4	4.350065e+0	3.625054e-1
13	hsa-miR-133b	hsa-miR-25	MI0000082			0.347141	2.855637e-4	4.947962e+0	3.806125e-1
14	hsa-miR-133b	hsa-miR-16				-0.345806	3.024678e-4	5.240860e+0	3.743471e-1
15	hsa-miR-133b	hsa-miR-654-3p				0.343679	3.313217e-4	5.740811e+0	3.827207e-1
16	hsa-miR-133b	hsa-miR-30b	MI0000441			0.343070	3.400377e-4	5.891833e+0	3.682395e-1
17	hsa-miR-133b	hsa-miR-296-5p				0.341772	3.593413e-4	6.226307e+0	3.662533e-1
18	hsa-miR-133b	hsa-miR-491-5p				0.338507	4.124008e-4	7.145670e+0	3.969816e-1
19	hsa-miR-133b	hsa-miR-17	MI0000071			-0.337860	4.237525e-4	7.342360e+0	3.864400e-1
20	hsa-miR-133b	hsa-miR-361-3p				0.337707	4.264723e-4	7.389486e+0	3.694743e-1
21	hsa-miR-133b	hsa-miR-27a	MI0000085			0.337528	4.296746e-4	7.444973e+0	3.545225e-1
22	hsa-miR-133b	hsa-miR-337-3p				0.335714	4.634324e-4	8.029893e+0	3.649951e-1
23	hsa-miR-133b	hsa-miR-146b-3p				0.334539	4.865779e-4	8.430936e+0	3.665624e-1
24	hsa-miR-133b	hsa-miR-17-3p				-0.333869	5.002631e-4	8.668059e+0	3.611691e-1
25	hsa-miR-133b	hsa-miR-505	MI0003190			0.333366	5.107562e-4	8.849873e+0	3.539949e-1
26	hsa-miR-133b	hsa-miR-193a-5p				0.332077	5.385732e-4	9.331857e+0	3.589176e-1
27	hsa-miR-133b	hsa-miR-329				0.329183	6.061827e-4	1.050333e+1	3.890121e-1
28	hsa-miR-133b	7963689	NM_003717	NPFF		-0.328552	6.219400e-4	1.077635e+1	3.848698e-1
29	hsa-miR-133b	hsa-miR-223	MI0000300			0.326799	6.676531e-4	1.156843e+1	3.989112e-1
30	hsa-miR-133b	8134201	NM_021167	GATAD1		-0.325161	7.131266e-4	1.235634e+1	4.118782e-1
31	hsa-miR-133b	7973403	NM_138460	CMTM5		0.323327	7.673828e-4	1.329644e+1	4.289174e-1
32	hsa-miR-133b	8034448	NM_016145	C19orf56		0.318341	9.345894e-4	1.619363e+1	5.060510e-1
33	hsa-miR-133b	8029188	NM_133444	ZNF526		-0.311560	1.215381e-3	2.105891e+1	6.381489e-1
34	hsa-miR-133b	hsa-miR-501-3p				0.310879	1.247439e-3	2.161438e+1	6.357171e-1
35	hsa-miR-133b	hsa-miR-145-3p				0.308435	1.369022e-3	2.372104e+1	6.777441e-1
36	hsa-miR-133b	7905092	NM_016074	BOLA1		0.307421	1.422507e-3	2.464777e+1	6.846604e-1
37	hsa-miR-133b	hsa-miR-30c				0.307164	1.436367e-3	2.488793e+1	6.726466e-1
38	hsa-miR-133b	8083164	ENST00000362449			0.307099	1.439902e-3	2.494918e+1	6.565574e-1
39	hsa-miR-133b	8011499	NM_002558	P2RX1		0.306836	1.454264e-3	2.519803e+1	6.461033e-1
40	hsa-miR-133b	hsa-miR-16-1-3p				-0.306413	1.477623e-3	2.560277e+1	6.400692e-1
41	hsa-miR-133b	7947423	ENST00000363615			-0.306223	1.488172e-3	2.578556e+1	6.289160e-1
42	hsa-miR-133b	8122740	ENST00000459301			-0.305753	1.514682e-3	2.624490e+1	6.248786e-1
43	hsa-miR-133b	tRNA fragment				0.302300	1.722967e-3	2.985384e+1	6.942754e-1
44	hsa-miR-133b	hsa-miR-26b-3p				0.300638	1.832174e-3	3.174608e+1	7.215019e-1
45	hsa-miR-133b	hsa-miR-9				-0.299967	1.878016e-3	3.254039e+1	7.231197e-1
46	hsa-miR-133b	hsa-miR-454	MI0003820			-0.297399	2.063234e-3	3.574966e+1	7.771665e-1
47	hsa-miR-133b	7975889	NM_014909	VASH1		-0.297048	2.089759e-3	3.620925e+1	7.704096e-1
48	hsa-miR-133b	hsa-miR-487b	MI0003530			0.296807	2.108138e-3	3.652771e+1	7.609939e-1
49	hsa-miR-133b	8037962	NM_019855	CABP5		0.295756	2.190211e-3	3.794979e+1	7.744855e-1
50	hsa-miR-133b	8145914	NM_004874	BAG4		-0.294042	2.330151e-3	4.037453e+1	8.074906e-1

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.