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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 7369.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
7369 8149157 NR_027000 LOC349196 link to infopage hypothetical LOC349196

Fetching correlation data, please wait...
Getting list of correlations for id 7369.
Getting list of p-values for id 7369.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.088 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8149157 8149153 NR_027000 LOC349196 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8149157 8149210 NR_027000 LOC349196 link to infopage 0.907172 1.627325e-40 2.819666e-36 1.409833e-36
3 8149157 8149161 NR_027000 LOC349196 link to infopage 0.907172 1.627325e-40 2.819666e-36 9.398887e-37
4 8149157 8144490 NR_027000 LOC349196 link to infopage 0.871357 1.266146e-33 2.193851e-29 5.484627e-30
5 8149157 8144492 NR_027000 LOC349196 link to infopage 0.871357 1.266146e-33 2.193851e-29 4.387702e-30
6 8149157 8144416 NR_027000 LOC349196 link to infopage 0.871357 1.266146e-33 2.193851e-29 3.656418e-30
7 8149157 8144418 NR_027000 LOC349196 link to infopage 0.871357 1.266146e-33 2.193851e-29 3.134073e-30
8 8149157 8144410 NR_027000 LOC349196 link to infopage 0.847086 4.876179e-30 8.448956e-26 1.056120e-26
9 8149157 8144494 NR_027000 LOC349196 link to infopage 0.838792 5.929031e-29 1.027323e-24 1.141470e-25
10 8149157 8144420 NR_027000 LOC349196 link to infopage 0.838792 5.929031e-29 1.027323e-24 1.027323e-25
11 8149157 7953735 NR_027000 LOC349196 link to infopage 0.828506 1.086675e-27 1.882882e-23 1.711711e-24
12 8149157 8149167 NR_027000 LOC349196 link to infopage 0.825810 2.256014e-27 3.908995e-23 3.257496e-24
13 8149157 8149165 NR_027000 LOC349196 link to infopage 0.825810 2.256014e-27 3.908995e-23 3.006919e-24
14 8149157 8149222 NR_027000 LOC349196 link to infopage 0.814014 4.785511e-26 8.291855e-22 5.922754e-23
15 8149157 8149226 NR_027000 LOC349196 link to infopage 0.814014 4.785511e-26 8.291855e-22 5.527904e-23
16 8149157 8149218 NR_027000 LOC349196 link to infopage 0.814014 4.785511e-26 8.291855e-22 5.182410e-23
17 8149157 8149220 NR_027000 LOC349196 link to infopage 0.814014 4.785511e-26 8.291855e-22 4.877562e-23
18 8149157 8149224 NR_027000 LOC349196 link to infopage 0.814014 4.785511e-26 8.291855e-22 4.606586e-23
19 8149157 8149216 NR_027000 LOC349196 link to infopage 0.812174 7.558050e-26 1.309583e-21 6.892544e-23
20 8149157 8149214 NR_027000 LOC349196 link to infopage 0.787429 2.248820e-23 3.896530e-19 1.948265e-20
21 8149157 8149151 NR_027000 LOC349196 link to infopage 0.787429 2.248820e-23 3.896530e-19 1.855490e-20
22 8149157 8144412 NR_027000 LOC349196 link to infopage 0.784095 4.572030e-23 7.921956e-19 3.600889e-20
23 8149157 8144414 NR_027000 LOC349196 link to infopage 0.784095 4.572030e-23 7.921956e-19 3.444329e-20
24 8149157 8144488 NR_027000 LOC349196 link to infopage 0.624274 1.115931e-12 1.933573e-8 8.056554e-10
25 8149157 8149228 NR_027000 LOC349196 link to infopage 0.586041 5.110224e-11 8.854485e-7 3.541794e-8
26 8149157 8130565 link to infopage 0.426347 5.764382e-6 9.987945e-2 3.841517e-3
27 8149157 7952268 NM_006288 THY1 link to infopage 0.423436 6.776281e-6 1.174126e-1 4.348616e-3
28 8149157 8172443 NM_002536 TBC1D25 link to infopage 0.400558 2.295130e-5 3.976772e-1 1.420276e-2
29 8149157 7944042 NM_002572 PAFAH1B2 link to infopage -0.399697 2.398828e-5 4.156449e-1 1.433258e-2
30 8149157 8169859 NM_018990 SASH3 link to infopage -0.391087 3.707036e-5 6.423181e-1 2.141060e-2
31 8149157 8137219 NM_138434 C7orf29 link to infopage 0.389691 3.973686e-5 6.885207e-1 2.221034e-2
32 8149157 7931062 NM_144587 BTBD16 link to infopage 0.387296 4.473055e-5 7.750462e-1 2.422019e-2
33 8149157 8031768 NM_001010879 ZIK1 link to infopage 0.380458 6.240983e-5 1.081375e+0 3.276894e-2
34 8149157 8044351 CR590757 RPL22P15 link to infopage 0.379762 6.453690e-5 1.118231e+0 3.288914e-2
35 8149157 7997245 link to infopage 0.378152 6.971586e-5 1.207967e+0 3.451333e-2
36 8149157 8037363 NM_145296 CADM4 link to infopage 0.376615 7.501768e-5 1.299831e+0 3.610643e-2
37 8149157 8136893 NM_000083 CLCN1 link to infopage 0.376579 7.514373e-5 1.302015e+0 3.518961e-2
38 8149157 7989718 NM_016563 RASL12 link to infopage 0.373861 8.546693e-5 1.480886e+0 3.897067e-2
39 8149157 7966829 NM_018639 WSB2 link to infopage -0.367620 1.143702e-4 1.981693e+0 5.081264e-2
40 8149157 8135990 NM_001458 FLNC link to infopage 0.366742 1.190951e-4 2.063561e+0 5.158903e-2
41 8149157 7996403 NM_025187 C16orf70 link to infopage -0.366321 1.214303e-4 2.104023e+0 5.131763e-2
42 8149157 7966315 NM_005719 ARPC3 link to infopage -0.363810 1.362319e-4 2.360490e+0 5.620213e-2
43 8149157 8072316 NM_001017437 CCDC157 link to infopage 0.363689 1.369858e-4 2.373552e+0 5.519889e-2
44 8149157 7914992 link to infopage 0.363323 1.392898e-4 2.413474e+0 5.485169e-2
45 8149157 8014241 NM_018042 SLFN12 link to infopage -0.362701 1.432935e-4 2.482847e+0 5.517437e-2
46 8149157 8044548 NM_014440 IL1F6 link to infopage 0.361194 1.534284e-4 2.658455e+0 5.779249e-2
47 8149157 7931683 NM_014974 DIP2C link to infopage 0.360494 1.583579e-4 2.743867e+0 5.838015e-2
48 8149157 8067029 NM_002237 KCNG1 link to infopage 0.359934 1.624057e-4 2.814004e+0 5.862509e-2
49 8149157 7947801 NM_016223 PACSIN3 link to infopage 0.355138 2.012358e-4 3.486813e+0 7.115946e-2
50 8149157 8166098 NM_004251 RAB9A link to infopage -0.354324 2.086164e-4 3.614696e+0 7.229391e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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