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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 7844.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
7844 8149220 NR_027000 LOC349196 link to infopage hypothetical LOC349196

Fetching correlation data, please wait...
Getting list of correlations for id 7844.
Getting list of p-values for id 7844.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8149220 8149218 NR_027000 LOC349196 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8149220 8149222 NR_027000 LOC349196 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8149220 8149226 NR_027000 LOC349196 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
4 8149220 8149224 NR_027000 LOC349196 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
5 8149220 8149165 NR_027000 LOC349196 link to infopage 0.978372 2.610831e-72 4.523788e-68 9.047575e-69
6 8149220 8149167 NR_027000 LOC349196 link to infopage 0.978372 2.610831e-72 4.523788e-68 7.539646e-69
7 8149220 8149216 NR_027000 LOC349196 link to infopage 0.968473 5.467934e-64 9.474290e-60 1.353470e-60
8 8149220 8144416 NR_027000 LOC349196 link to infopage 0.935460 2.502420e-48 4.335943e-44 5.419929e-45
9 8149220 8144418 NR_027000 LOC349196 link to infopage 0.935460 2.502420e-48 4.335943e-44 4.817715e-45
10 8149220 8144490 NR_027000 LOC349196 link to infopage 0.935460 2.502420e-48 4.335943e-44 4.335943e-45
11 8149220 8144492 NR_027000 LOC349196 link to infopage 0.935460 2.502420e-48 4.335943e-44 3.941767e-45
12 8149220 8144410 NR_027000 LOC349196 link to infopage 0.883661 9.875571e-36 1.711140e-31 1.425950e-32
13 8149220 8149214 NR_027000 LOC349196 link to infopage 0.876465 1.797830e-34 3.115099e-30 2.396230e-31
14 8149220 8149151 NR_027000 LOC349196 link to infopage 0.876465 1.797830e-34 3.115099e-30 2.225071e-31
15 8149220 8144494 NR_027000 LOC349196 link to infopage 0.876367 1.867811e-34 3.236355e-30 2.157570e-31
16 8149220 8144420 NR_027000 LOC349196 link to infopage 0.876367 1.867811e-34 3.236355e-30 2.022722e-31
17 8149220 8144412 NR_027000 LOC349196 link to infopage 0.872069 9.694236e-34 1.679720e-29 9.880707e-31
18 8149220 8144414 NR_027000 LOC349196 link to infopage 0.872069 9.694236e-34 1.679720e-29 9.331779e-31
19 8149220 8149157 NR_027000 LOC349196 link to infopage 0.814014 4.785511e-26 8.291855e-22 4.364134e-23
20 8149220 8149153 NR_027000 LOC349196 link to infopage 0.814014 4.785511e-26 8.291855e-22 4.145928e-23
21 8149220 8149210 NR_027000 LOC349196 link to infopage 0.768392 1.099411e-21 1.904949e-17 9.071186e-19
22 8149220 8149161 NR_027000 LOC349196 link to infopage 0.768392 1.099411e-21 1.904949e-17 8.658859e-19
23 8149220 7953735 NR_027000 LOC349196 link to infopage 0.700506 8.986942e-17 1.557167e-12 6.770293e-14
24 8149220 8149228 NR_027000 LOC349196 link to infopage 0.692168 2.903171e-16 5.030324e-12 2.095968e-13
25 8149220 8005833 NR_003064 PYY2 link to infopage 0.489821 1.138398e-7 1.972502e-3 7.890007e-5
26 8149220 8000600 ENST00000357418 link to infopage 0.485112 1.566377e-7 2.714062e-3 1.043870e-4
27 8149220 8144488 NR_027000 LOC349196 link to infopage 0.467374 4.996515e-7 8.657462e-3 3.206467e-4
28 8149220 7994350 ENST00000357646 link to infopage 0.462522 6.785893e-7 1.175792e-2 4.199256e-4
29 8149220 8170921 NM_017514 PLXNA3 link to infopage 0.461869 7.068868e-7 1.224823e-2 4.223527e-4
30 8149220 7960280 NM_152441 FBXL14 link to infopage 0.451578 1.330545e-6 2.305436e-2 7.684786e-4
31 8149220 7949440 NM_001099409 EHBP1L1 link to infopage 0.449916 1.470835e-6 2.548515e-2 8.221016e-4
32 8149220 7963265 NR_026893 POU6F1 link to infopage 0.443364 2.172509e-6 3.764306e-2 1.176346e-3
33 8149220 8034276 NM_138783 ZNF653 link to infopage 0.441953 2.360273e-6 4.089646e-2 1.239287e-3
34 8149220 7898537 NM_002584 PAX7 link to infopage 0.439362 2.745932e-6 4.757876e-2 1.399375e-3
35 8149220 8040949 NM_173853 KRTCAP3 link to infopage 0.438381 2.906921e-6 5.036822e-2 1.439092e-3
36 8149220 8029744 NM_017659 QPCTL link to infopage 0.437515 3.056373e-6 5.295778e-2 1.471049e-3
37 8149220 8165021 ENST00000428385 link to infopage 0.437482 3.062223e-6 5.305913e-2 1.434031e-3
38 8149220 7960117 NM_018663 PXMP2 link to infopage 0.434800 3.573488e-6 6.191782e-2 1.629416e-3
39 8149220 8125903 NM_003322 TULP1 link to infopage 0.433204 3.915122e-6 6.783733e-2 1.739419e-3
40 8149220 8153625 NM_017570 OPLAH link to infopage 0.432218 4.141129e-6 7.175333e-2 1.793833e-3
41 8149220 8011188 ENST00000330676 link to infopage 0.431793 4.242381e-6 7.350774e-2 1.792872e-3
42 8149220 8099918 AK291454 UBE2K link to infopage 0.431036 4.428472e-6 7.673214e-2 1.826956e-3
43 8149220 8094101 NM_001014448 CPZ link to infopage 0.430988 4.440695e-6 7.694393e-2 1.789394e-3
44 8149220 8158554 NM_016307 PRRX2 link to infopage 0.429836 4.739404e-6 8.211965e-2 1.866356e-3
45 8149220 8038707 NM_144505 KLK8 link to infopage 0.428803 5.023551e-6 8.704306e-2 1.934290e-3
46 8149220 8042532 NM_012476 VAX2 link to infopage 0.428760 5.035613e-6 8.725207e-2 1.896784e-3
47 8149220 8047771 NM_001959 EEF1B2 link to infopage 0.427584 5.379285e-6 9.320688e-2 1.983125e-3
48 8149220 8003633 ENST00000391429 link to infopage 0.425636 5.997695e-6 1.039221e-1 2.165043e-3
49 8149220 8010590 NM_001080519 BAHCC1 link to infopage 0.424511 6.384718e-6 1.106280e-1 2.257714e-3
50 8149220 8159616 NM_001144026 NDOR1 link to infopage 0.424134 6.519581e-6 1.129648e-1 2.259296e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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