[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 9661.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
9661	7931656	NM_033178	DUX4		double homeobox 4

Fetching correlation data, please wait...
Getting list of correlations for id 9661.
Getting list of p-values for id 9661.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.109 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7931656	7931659	NM_033178	DUX4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7931656	7931662	NM_033178	DUX4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7931656	7931671	NM_033178	DUX4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	7931656	7931668	NM_033178	DUX4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	7931656	7931665	NM_033178	DUX4	0.992804	9.103812e-97	1.577417e-92	3.154835e-93
6	7931656	8098743	NM_033178	DUX4	0.974323	1.626824e-68	2.818798e-64	4.697997e-65
7	7931656	8098730	NM_033178	DUX4	0.974323	1.626824e-68	2.818798e-64	4.026854e-65
8	7931656	8098725	NM_033178	DUX4	0.952613	4.768586e-55	8.262529e-51	1.032816e-51
9	7931656	8104122	NM_033178	DUX4	0.879476	5.460159e-35	9.460818e-31	1.051202e-31
10	7931656	8098732	NM_033178	DUX4	0.860085	7.101625e-32	1.230499e-27	1.230499e-28
11	7931656	8098740	NM_033178	DUX4	0.856618	2.284838e-31	3.958938e-27	3.599035e-28
12	7931656	8161533	NM_001085476	FOXD4L6	0.786393	2.807606e-23	4.864739e-19	4.053950e-20
13	7931656	8063796	NM_001794	CDH4	0.783039	5.709278e-23	9.892465e-19	7.609589e-20
14	7931656	8125568	NM_080680	COL11A2	0.772006	5.408382e-22	9.371103e-18	6.693645e-19
15	7931656	8032094	NM_024888	LPPR3	0.769555	8.762631e-22	1.518301e-17	1.012201e-18
16	7931656	7928291	NM_004273	CHST3	0.768050	1.175079e-21	2.036059e-17	1.272537e-18
17	7931656	8027213	NM_198537	YJEFN3	0.766365	1.627457e-21	2.819895e-17	1.658762e-18
18	7931656	8037651	NM_175875	SIX5	0.762278	3.546933e-21	6.145771e-17	3.414317e-18
19	7931656	8159808	NM_207305	FOXD4	0.755284	1.298038e-20	2.249111e-16	1.183743e-17
20	7931656	8044634	NM_012184	FOXD4L1	0.752970	1.975210e-20	3.422446e-16	1.711223e-17
21	7931656	7998724	NM_020764	CASKIN1	0.752148	2.290266e-20	3.968344e-16	1.889688e-17
22	7931656	8019334	NM_178493	NOTUM	0.747326	5.393485e-20	9.345292e-16	4.247860e-17
23	7931656	8149652	NM_005144	HR	0.746736	5.981507e-20	1.036416e-15	4.506155e-17
24	7931656	8059014	NM_017521	FEV	0.746695	6.024652e-20	1.043891e-15	4.349548e-17
25	7931656	8016320	NM_203400	RPRML	0.746555	6.174473e-20	1.069851e-15	4.279404e-17
26	7931656	8155661	NM_199135	FOXD4L3	0.744706	8.521148e-20	1.476459e-15	5.678690e-17
27	7931656	7985920	NM_001039958	MESP2	0.743259	1.094430e-19	1.896319e-15	7.023406e-17
28	7931656	8053022	NM_001965	EGR4	0.740779	1.674129e-19	2.900762e-15	1.035987e-16
29	7931656	8155440	NM_001099279	FOXD4L2	0.740451	1.770067e-19	3.066995e-15	1.057585e-16
30	7931656	8161583	NM_001099279	FOXD4L2	0.740451	1.770067e-19	3.066995e-15	1.022332e-16
31	7931656	8153876	NM_025251	ARHGAP39	0.738316	2.540814e-19	4.402468e-15	1.420151e-16
32	7931656	8010696	NM_148896	NPB	0.737667	2.834075e-19	4.910601e-15	1.534563e-16
33	7931656	8019693	NM_148896	NPB	0.737667	2.834075e-19	4.910601e-15	1.488061e-16
34	7931656	8036252	NM_015526	CLIP3	0.737390	2.969083e-19	5.144530e-15	1.513097e-16
35	7931656	8121209	NM_005604	POU3F2	0.735012	4.415536e-19	7.650798e-15	2.185942e-16
36	7931656	7911750	NM_001010926	HES5	0.734913	4.488282e-19	7.776847e-15	2.160235e-16
37	7931656	8050805	NM_001035256	POMC	0.734651	4.687934e-19	8.122783e-15	2.195347e-16
38	7931656	8040792	NM_007046	EMILIN1	0.734068	5.162061e-19	8.944304e-15	2.353764e-16
39	7931656	8174642	ENST00000436902		0.733985	5.233315e-19	9.067765e-15	2.325068e-16
40	7931656	8049942	NM_080741	NEU4	0.733056	6.100094e-19	1.056963e-14	2.642408e-16
41	7931656	7931553	NM_003577	UTF1	0.731747	7.560762e-19	1.310053e-14	3.195252e-16
42	7931656	7911376	NM_001142467	HES4	0.731715	7.600824e-19	1.316995e-14	3.135702e-16
43	7931656	8159670	NM_006647	NOXA1	0.731623	7.716473e-19	1.337033e-14	3.109380e-16
44	7931656	8064031	NM_139317	BIRC7	0.731344	8.076162e-19	1.399357e-14	3.180356e-16
45	7931656	8024605	NM_021938	CELF5	0.731207	8.258897e-19	1.431019e-14	3.180042e-16
46	7931656	8071989	NM_004076	CRYBB3	0.731007	8.531607e-19	1.478271e-14	3.213634e-16
47	7931656	7949015	NM_001144936	C11orf95	0.730933	8.635107e-19	1.496205e-14	3.183415e-16
48	7931656	8127128	NM_033480	FBXO9	0.730760	8.882136e-19	1.539008e-14	3.206266e-16
49	7931656	8030578	ENST00000377006		0.730279	9.605861e-19	1.664408e-14	3.396750e-16
50	7931656	8045332	ENST00000458407		0.729629	1.067319e-18	1.849343e-14	3.698687e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation