[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 3790.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3790	8155440	NM_001099279	FOXD4L2		forkhead box D4-like 2

Fetching correlation data, please wait...
Getting list of correlations for id 3790.
Getting list of p-values for id 3790.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8155440	8161583	NM_001099279	FOXD4L2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8155440	8161571	NM_001099279	FOXD4L2	0.937046	7.236664e-49	1.253897e-44	6.269484e-45
3	8155440	8161533	NM_001085476	FOXD4L6	0.919177	1.773162e-43	3.072357e-39	1.024119e-39
4	8155440	8044634	NM_012184	FOXD4L1	0.885419	4.721465e-36	8.180883e-32	2.045221e-32
5	8155440	8155661	NM_199135	FOXD4L3	0.874050	4.572644e-34	7.923020e-30	1.584604e-30
6	8155440	8159808	NM_207305	FOXD4	0.870945	1.476205e-33	2.557821e-29	4.263035e-30
7	8155440	7938090	NM_176875	CCKBR	0.776127	2.370558e-22	4.107466e-18	5.867809e-19
8	8155440	8070933	NM_006657	FTCD	0.775244	2.832939e-22	4.908633e-18	6.135792e-19
9	8155440	8063796	NM_001794	CDH4	0.774400	3.356601e-22	5.815983e-18	6.462203e-19
10	8155440	8037563	NM_006663	PPP1R13L	0.769535	8.797457e-22	1.524335e-17	1.524335e-18
11	8155440	8064031	NM_139317	BIRC7	0.768231	1.134338e-21	1.965467e-17	1.786788e-18
12	8155440	8104122	NM_033178	DUX4	0.767381	1.337694e-21	2.317823e-17	1.931519e-18
13	8155440	7934544	NM_144589	COMTD1	0.766484	1.590708e-21	2.756220e-17	2.120170e-18
14	8155440	7952893	BC024764	IQSEC3	0.765710	1.845882e-21	3.198360e-17	2.284543e-18
15	8155440	8079021	NM_001904	CTNNB1	-0.765493	1.924123e-21	3.333927e-17	2.222618e-18
16	8155440	7987701	NM_016642	SPTBN5	0.765077	2.083706e-21	3.610437e-17	2.256523e-18
17	8155440	7929315	NM_183374	CYP26C1	0.764885	2.161843e-21	3.745825e-17	2.203426e-18
18	8155440	8076007	NM_025045	BAIAP2L2	0.763583	2.770221e-21	4.799962e-17	2.666646e-18
19	8155440	8153876	NM_025251	ARHGAP39	0.762299	3.532674e-21	6.121064e-17	3.221613e-18
20	8155440	7947991	NM_015231	NUP160	-0.762189	3.606510e-21	6.249000e-17	3.124500e-18
21	8155440	8086985	NM_000094	COL7A1	0.762121	3.653578e-21	6.330554e-17	3.014549e-18
22	8155440	7937089	NM_173575	STK32C	0.761037	4.478993e-21	7.760752e-17	3.527614e-18
23	8155440	7949015	NM_001144936	C11orf95	0.761026	4.488903e-21	7.777922e-17	3.381705e-18
24	8155440	7974771	NM_022495	C14orf135	-0.760523	4.931907e-21	8.545516e-17	3.560632e-18
25	8155440	8137715	NM_182924	MICALL2	0.758999	6.551512e-21	1.135181e-16	4.540722e-18
26	8155440	8160472	NM_001004125	TUSC1	0.758704	6.920321e-21	1.199084e-16	4.611862e-18
27	8155440	7927367	NM_001040084	ANXA8	0.757464	8.703748e-21	1.508098e-16	5.585550e-18
28	8155440	8098732	NM_033178	DUX4	0.757294	8.980418e-21	1.556037e-16	5.557275e-18
29	8155440	8141648	NM_015831	ACHE	0.756999	9.480966e-21	1.642767e-16	5.664714e-18
30	8155440	8098740	NM_033178	DUX4	0.755355	1.281278e-20	2.220071e-16	7.400236e-18
31	8155440	8153704	NM_031309	SCRT1	0.754913	1.388900e-20	2.406547e-16	7.763055e-18
32	8155440	8125234	NM_019105	TNXB	0.754140	1.598312e-20	2.769395e-16	8.654360e-18
33	8155440	8125568	NM_080680	COL11A2	0.752275	2.238354e-20	3.878396e-16	1.175271e-17
34	8155440	7896761	NM_152486	SAMD11	0.751615	2.520083e-20	4.366547e-16	1.284279e-17
35	8155440	8062948	NM_014276	RBPJL	0.750758	2.937422e-20	5.089672e-16	1.454192e-17
36	8155440	7955578	NM_181711	GRASP	0.749496	3.677314e-20	6.371683e-16	1.769912e-17
37	8155440	7896985	NM_080875	MIB2	0.748885	4.097239e-20	7.099287e-16	1.918726e-17
38	8155440	7910520	NM_014236	GNPAT	-0.748864	4.112433e-20	7.125613e-16	1.875161e-17
39	8155440	8110821	NM_001044	SLC6A3	0.746598	6.127780e-20	1.061760e-15	2.722463e-17
40	8155440	7924884	NM_003493	HIST3H3	0.746589	6.137571e-20	1.063457e-15	2.658642e-17
41	8155440	8131056	NM_017781	CYP2W1	0.746550	6.179121e-20	1.070656e-15	2.611357e-17
42	8155440	8156743	NM_004473	FOXE1	0.746379	6.366866e-20	1.103187e-15	2.626636e-17
43	8155440	8121209	NM_005604	POU3F2	0.746360	6.388780e-20	1.106984e-15	2.574381e-17
44	8155440	7897257	NM_207396	RNF207	0.746104	6.681235e-20	1.157658e-15	2.631040e-17
45	8155440	8024995	NM_004558	NRTN	0.746097	6.688500e-20	1.158916e-15	2.575370e-17
46	8155440	7912706	NM_004431	EPHA2	0.746028	6.769697e-20	1.172985e-15	2.549968e-17
47	8155440	8075934	NM_014550	CARD10	0.745942	6.872279e-20	1.190760e-15	2.533531e-17
48	8155440	8033462	NM_206833	CTXN1	0.745608	7.284964e-20	1.262266e-15	2.629720e-17
49	8155440	8005328	NM_016239	MYO15A	0.745456	7.479825e-20	1.296029e-15	2.644958e-17
50	8155440	7945688	NR_003512	INS-IGF2	0.744967	8.143618e-20	1.411045e-15	2.822089e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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