[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2186	7956076	NM_001798	CDK2		cyclin-dependent kinase 2

Fetching correlation data, please wait...
Getting list of correlations for id 2186.
Getting list of p-values for id 2186.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7956076	8012856	NM_018127	ELAC2	0.550122	1.211073e-9	2.098427e-5	2.098427e-5
2	7956076	8017547	NM_001099786	ICAM2	0.531697	5.338275e-9	9.249630e-5	4.624815e-5
3	7956076	7901601	NM_016491	MRPL37	0.528298	6.951463e-9	1.204480e-4	4.014933e-5
4	7956076	8053158	NM_006302	MOGS	0.522864	1.053973e-8	1.826219e-4	4.565548e-5
5	7956076	7980296	NM_006827	TMED10	0.521711	1.150130e-8	1.992830e-4	3.985659e-5
6	7956076	8034837	NM_006145	DNAJB1	0.521240	1.191809e-8	2.065048e-4	3.441746e-5
7	7956076	8028192	AK022329		-0.519756	1.332843e-8	2.309417e-4	3.299167e-5
8	7956076	7956613	NM_005981	TSPAN31	0.519072	1.403079e-8	2.431116e-4	3.038894e-5
9	7956076	7940372	NM_024092	TMEM109	0.513347	2.146785e-8	3.719734e-4	4.133038e-5
10	7956076	7983979	L17330		-0.509437	2.857695e-8	4.951529e-4	4.951529e-5
11	7956076	8061136	NM_002823	PTMA	0.502814	4.601815e-8	7.973566e-4	7.248696e-5
12	7956076	8073068	NM_014508	APOBEC3C	0.502723	4.631641e-8	8.025245e-4	6.687704e-5
13	7956076	8061966	NM_016732	RALY	0.501994	4.877873e-8	8.451891e-4	6.501455e-5
14	7956076	7918749	BC063894	DENND2C	-0.499758	5.713720e-8	9.900163e-4	7.071545e-5
15	7956076	7898328	NM_001114600	C1orf144	0.498831	6.098762e-8	1.056733e-3	7.044883e-5
16	7956076	8024019	NM_002819	PTBP1	0.497558	6.668233e-8	1.155405e-3	7.221280e-5
17	7956076	8108558	NM_080670	SLC35A4	0.497493	6.698809e-8	1.160703e-3	6.827662e-5
18	7956076	8098880	NM_001012614	CTBP1	0.495903	7.485204e-8	1.296961e-3	7.205340e-5
19	7956076	7960716	NM_001144831	PHB2	0.495154	7.885174e-8	1.366264e-3	7.190863e-5
20	7956076	8015655	NM_178126	FAM134C	0.491279	1.030292e-7	1.785187e-3	8.925934e-5
21	7956076	8030768	NM_001002231	KLK2	-0.488642	1.233669e-7	2.137578e-3	1.017894e-4
22	7956076	8005313	NM_001388	DRG2	0.487357	1.346073e-7	2.332341e-3	1.060155e-4
23	7956076	8028380	NM_002812	PSMD8	0.481925	1.938751e-7	3.359274e-3	1.460554e-4
24	7956076	8148512	NM_207414	FLJ43860	-0.480342	2.153546e-7	3.731449e-3	1.554771e-4
25	7956076	7920600	NM_183001	SHC1	0.470202	4.170950e-7	7.227005e-3	2.890802e-4
26	7956076	8052925	NM_144582	TEX261	0.469923	4.246409e-7	7.357754e-3	2.829905e-4
27	7956076	7995322			-0.465926	5.477089e-7	9.490151e-3	3.514871e-4
28	7956076	8036045	NM_175872	ZNF792	0.465205	5.732702e-7	9.933052e-3	3.547519e-4
29	7956076	8016552	NM_002634	PHB	0.464917	5.837630e-7	1.011486e-2	3.487884e-4
30	7956076	7981714	ENST00000333301		-0.464209	6.104155e-7	1.057667e-2	3.525557e-4
31	7956076	8140061	NM_001707	BCL7B	0.463638	6.327090e-7	1.096295e-2	3.536435e-4
32	7956076	7996675	NM_020457	THAP11	0.462718	6.703261e-7	1.161474e-2	3.629606e-4
33	7956076	7897286	AY358179	LOC100130071	-0.462458	6.813295e-7	1.180540e-2	3.577393e-4
34	7956076	8143385	ENST00000365602		-0.461783	7.106954e-7	1.231422e-2	3.621829e-4
35	7956076	8178470	NM_002701	POU5F1	-0.461513	7.227708e-7	1.252345e-2	3.578129e-4
36	7956076	8039769	AK096324		-0.460496	7.700305e-7	1.334232e-2	3.706200e-4
37	7956076	7913110	BC034589	KIAA0090	0.459824	8.028715e-7	1.391135e-2	3.759826e-4
38	7956076	7923812	NM_003929	RAB7L1	0.459030	8.433965e-7	1.461353e-2	3.845666e-4
39	7956076	7990417	NM_005697	SCAMP2	0.458552	8.687003e-7	1.505197e-2	3.859480e-4
40	7956076	8069131	ENST00000443689		-0.457810	9.094255e-7	1.575762e-2	3.939404e-4
41	7956076	8014925	NM_014815	MED24	0.457740	9.133682e-7	1.582593e-2	3.859983e-4
42	7956076	8028104	NM_014266	HCST	0.457729	9.139909e-7	1.583672e-2	3.770648e-4
43	7956076	7905088	NM_003517	HIST2H2AC	0.457295	9.387433e-7	1.626560e-2	3.782699e-4
44	7956076	8040712	NM_001809	CENPA	-0.456851	9.647640e-7	1.671647e-2	3.799197e-4
45	7956076	8055139	AK056598	LOC151121	-0.455533	1.045988e-6	1.812384e-2	4.027520e-4
46	7956076	8082163	ENST00000384275		-0.454455	1.117219e-6	1.935806e-2	4.208274e-4
47	7956076	8133114	NM_173517	VKORC1L1	0.454354	1.124148e-6	1.947811e-2	4.144280e-4
48	7956076	8029831	NM_005184	CALM3	0.454309	1.127231e-6	1.953153e-2	4.069068e-4
49	7956076	8170412	NM_005364	MAGEA8	-0.453632	1.174673e-6	2.035356e-2	4.153788e-4
50	7956076	8013465	NM_005557	KRT16	-0.453464	1.186793e-6	2.056356e-2	4.112712e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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