[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7548	8121031	NM_006416	SLC35A1		solute carrier family 35 (CMP-sialic acid transporter), member A1

Fetching correlation data, please wait...
Getting list of correlations for id 7548.
Getting list of p-values for id 7548.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.145 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8121031	8142307	NM_015723	PNPLA8	0.859836	7.732635e-32	1.339834e-27	1.339834e-27
2	8121031	7978739	NM_001079537	TRAPPC6B	0.846011	6.795112e-30	1.177389e-25	5.886946e-26
3	8121031	8088718	NM_003968	UBA3	0.841704	2.506766e-29	4.343473e-25	1.447824e-25
4	8121031	7901867	NM_003368	USP1	0.840550	3.533046e-29	6.121709e-25	1.530427e-25
5	8121031	8112967	NM_174909	TMEM167A	0.836555	1.135182e-28	1.966930e-24	3.933860e-25
6	8121031	8135688	NM_016200	NAA38	0.835594	1.496195e-28	2.592457e-24	4.320761e-25
7	8121031	8078270	NM_002948	RPL15	0.835566	1.508081e-28	2.613051e-24	3.732930e-25
8	8121031	8131975	NM_006024	TAX1BP1	0.833167	2.980676e-28	5.164617e-24	6.455771e-25
9	8121031	8107613	NM_003100	SNX2	0.832293	3.810631e-28	6.602681e-24	7.336312e-25
10	8121031	7903032	NM_007358	MTF2	0.827078	1.602400e-27	2.776478e-23	2.776478e-24
11	8121031	7926836	NM_021252	RAB18	0.826506	1.870457e-27	3.240940e-23	2.946309e-24
12	8121031	8105353	NM_015360	SKIV2L2	0.826454	1.897011e-27	3.286950e-23	2.739125e-24
13	8121031	8067017	NM_003859	DPM1	0.825609	2.380893e-27	4.125373e-23	3.173364e-24
14	8121031	7969979	NM_032859	ABHD13	0.824697	3.039131e-27	5.265902e-23	3.761359e-24
15	8121031	8152222	NM_015878	AZIN1	0.824088	3.573937e-27	6.192560e-23	4.128373e-24
16	8121031	8135625	NM_006136	CAPZA2	0.823576	4.094109e-27	7.093863e-23	4.433665e-24
17	8121031	7935320	NM_020123	TM9SF3	0.822987	4.783840e-27	8.288960e-23	4.875859e-24
18	8121031	8039933	NM_017761	PNRC2	0.822691	5.171933e-27	8.961408e-23	4.978560e-24
19	8121031	7898910	NM_017761	PNRC2	0.822691	5.171933e-27	8.961408e-23	4.716530e-24
20	8121031	7974303	NM_030755	TMX1	0.821839	6.469019e-27	1.120887e-22	5.604435e-24
21	8121031	8068062	NM_006447	USP16	0.820872	8.326772e-27	1.442780e-22	6.870380e-24
22	8121031	7903908	NM_006090	CEPT1	0.820060	1.028395e-26	1.781900e-22	8.099545e-24
23	8121031	8044766	NM_016133	INSIG2	0.819277	1.258913e-26	2.181318e-22	9.483992e-24
24	8121031	8056201	NM_016836	RBMS1	0.818759	1.438471e-26	2.492438e-22	1.038516e-23
25	8121031	7974566	NM_018229	MUDENG	0.818585	1.504291e-26	2.606485e-22	1.042594e-23
26	8121031	8022473	NM_052911	ESCO1	0.818573	1.508998e-26	2.614642e-22	1.005631e-23
27	8121031	7972723	NM_018011	ARGLU1	0.818129	1.690834e-26	2.929707e-22	1.085077e-23
28	8121031	8022882	NM_006965	ZNF24	0.817205	2.140657e-26	3.709116e-22	1.324684e-23
29	8121031	7902166	NM_020948	MIER1	0.816231	2.741356e-26	4.749947e-22	1.637913e-23
30	8121031	8057887	NM_004226	STK17B	0.815857	3.012666e-26	5.220047e-22	1.740016e-23
31	8121031	7916969	NM_005455	ZRANB2	0.815840	3.026060e-26	5.243253e-22	1.691372e-23
32	8121031	8042270	NM_001001521	UGP2	0.814845	3.887409e-26	6.735714e-22	2.104911e-23
33	8121031	7980940	NM_004993	ATXN3	0.813913	4.908389e-26	8.504765e-22	2.577201e-23
34	8121031	8063283	NM_001316	CSE1L	0.813820	5.023526e-26	8.704263e-22	2.560077e-23
35	8121031	7938592	NM_032228	FAR1	0.813466	5.487033e-26	9.507381e-22	2.716395e-23
36	8121031	8055913	NM_017892	PRPF40A	0.813399	5.579206e-26	9.667090e-22	2.685303e-23
37	8121031	8127943	NM_153816	SNX14	0.812645	6.727796e-26	1.165725e-21	3.150609e-23
38	8121031	8169750	NM_001042750	STAG2	0.812441	7.075641e-26	1.225996e-21	3.226306e-23
39	8121031	8105463	NM_022913	GPBP1	0.811981	7.927142e-26	1.373536e-21	3.521887e-23
40	8121031	8115606	NM_006425	SLU7	0.811929	8.030025e-26	1.391362e-21	3.478406e-23
41	8121031	8044613	NM_001145355	CBWD1	0.811883	8.120409e-26	1.407023e-21	3.431764e-23
42	8121031	7902634	NM_025065	RPF1	0.811690	8.515681e-26	1.475512e-21	3.513124e-23
43	8121031	7993872	NM_003366	UQCRC2	0.811561	8.791273e-26	1.523264e-21	3.542474e-23
44	8121031	8055672	NM_015702	MMADHC	0.810706	1.084335e-25	1.878828e-21	4.270064e-23
45	8121031	7910550	NM_005999	TSNAX	0.810464	1.150639e-25	1.993712e-21	4.430470e-23
46	8121031	8106303	NM_016218	POLK	0.809975	1.296395e-25	2.246264e-21	4.883182e-23
47	8121031	7957186	NM_022771	TBC1D15	0.809131	1.591883e-25	2.758256e-21	5.868630e-23
48	8121031	8095773	NM_003715	USO1	0.809118	1.596786e-25	2.766751e-21	5.764064e-23
49	8121031	7950544	NM_004705	PRKRIR	0.808719	1.758758e-25	3.047400e-21	6.219184e-23
50	8121031	8150714	NM_052937	PCMTD1	0.808602	1.809435e-25	3.135207e-21	6.270415e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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