[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6445	8163019	NM_006686	ACTL7B		actin-like 7B

Fetching correlation data, please wait...
Getting list of correlations for id 6445.
Getting list of p-values for id 6445.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8163019	8040290	ENST00000364740		0.666938	8.021630e-15	1.389908e-10	1.389908e-10
2	8163019	8015410			0.658940	2.150016e-14	3.725333e-10	1.862666e-10
3	8163019	7977978	NM_005864	EFS	0.656033	3.054062e-14	5.291773e-10	1.763924e-10
4	8163019	8175685	NM_021049	MAGEA5	0.651090	5.499300e-14	9.528636e-10	2.382159e-10
5	8163019	7913226	NM_012400	PLA2G2D	0.645931	1.004414e-13	1.740348e-9	3.480695e-10
6	8163019	8107090			0.644206	1.225346e-13	2.123158e-9	3.538596e-10
7	8163019	8153101	NM_152888	COL22A1	0.642380	1.510380e-13	2.617035e-9	3.738621e-10
8	8163019	7995322			0.640323	1.908311e-13	3.306531e-9	4.133164e-10
9	8163019	8075934	NM_014550	CARD10	0.640089	1.959554e-13	3.395318e-9	3.772576e-10
10	8163019	8067551	ENST00000415185		0.638567	2.326966e-13	4.031934e-9	4.031934e-10
11	8163019	7992302	NM_020825	CRAMP1L	0.637916	2.503636e-13	4.338050e-9	3.943682e-10
12	8163019	7945645	NM_001005922	KRTAP5-1	0.633381	4.148443e-13	7.188008e-9	5.990007e-10
13	8163019	8137802	ENST00000382528		0.631890	4.889122e-13	8.471381e-9	6.516447e-10
14	8163019	8135099	NM_133457	EMID2	0.630743	5.544063e-13	9.606198e-9	6.861570e-10
15	8163019	8075705			0.629144	6.600930e-13	1.143743e-8	7.624955e-10
16	8163019	7960397	NM_020638	FGF23	0.627399	7.975986e-13	1.381999e-8	8.637494e-10
17	8163019	7987701	NM_016642	SPTBN5	0.622845	1.299655e-12	2.251913e-8	1.324654e-9
18	8163019	8031700	NM_001015878	AURKC	0.622710	1.318458e-12	2.284492e-8	1.269162e-9
19	8163019	8010287	NM_030968	C1QTNF1	0.622038	1.415967e-12	2.453446e-8	1.291287e-9
20	8163019	8158739	NM_006059	LAMC3	0.621897	1.437321e-12	2.490446e-8	1.245223e-9
21	8163019	8027854	NM_005303	FFAR1	0.621832	1.447226e-12	2.507608e-8	1.194099e-9
22	8163019	8162247	AF289567		0.621201	1.547097e-12	2.680655e-8	1.218480e-9
23	8163019	8089034	NM_031905	ARMC10	-0.619152	1.919893e-12	3.326598e-8	1.446347e-9
24	8163019	7995340			0.618342	2.089929e-12	3.621220e-8	1.508842e-9
25	8163019	8170965	NM_139250	CTAG1A	0.618155	2.131212e-12	3.692752e-8	1.477101e-9
26	8163019	8176149	NM_139250	CTAG1A	0.618155	2.131212e-12	3.692752e-8	1.420289e-9
27	8163019	7992140	ENST00000455256		0.614381	3.154566e-12	5.465917e-8	2.024414e-9
28	8163019	8036069	NM_152481	FAM187B	0.613819	3.342493e-12	5.791537e-8	2.068406e-9
29	8163019	7959249	ENST00000365075		0.611917	4.063420e-12	7.040689e-8	2.427824e-9
30	8163019	8131069	NM_001039966	GPER	0.611426	4.272377e-12	7.402748e-8	2.467583e-9
31	8163019	7963410	NM_173086	KRT6C	0.610797	4.555814e-12	7.893858e-8	2.546406e-9
32	8163019	8137151	NM_198455	SSPO	0.610605	4.645697e-12	8.049600e-8	2.515500e-9
33	8163019	7989785	NM_020962	IGDCC4	0.608464	5.772961e-12	1.000281e-7	3.031154e-9
34	8163019	7936144	NM_000494	COL17A1	0.608420	5.798681e-12	1.004738e-7	2.955110e-9
35	8163019	7998629	ENST00000431136		0.608221	5.916414e-12	1.025137e-7	2.928963e-9
36	8163019	7908907	NM_000674	ADORA1	0.607124	6.607712e-12	1.144918e-7	3.180328e-9
37	8163019	8073296	NM_005297	MCHR1	0.606738	6.869497e-12	1.190278e-7	3.216967e-9
38	8163019	8086985	NM_000094	COL7A1	0.605661	7.653298e-12	1.326087e-7	3.489702e-9
39	8163019	8034151	NM_020812	DOCK6	0.603824	9.192503e-12	1.592785e-7	4.084064e-9
40	8163019	7963545	NM_175834	KRT79	0.603125	9.853665e-12	1.707344e-7	4.268361e-9
41	8163019	8077970	NM_001004019	FBLN2	0.602599	1.038101e-11	1.798717e-7	4.387115e-9
42	8163019	7995336			0.601775	1.126212e-11	1.951388e-7	4.646163e-9
43	8163019	7952426	NM_014312	VSIG2	0.601410	1.167559e-11	2.023030e-7	4.704720e-9
44	8163019	8070757	NM_144991	C21orf29	0.600401	1.289464e-11	2.234254e-7	5.077851e-9
45	8163019	7998872	NR_026864	PRSS30P	0.600347	1.296354e-11	2.246192e-7	4.991538e-9
46	8163019	8175455	hsa-mir-504		0.600071	1.331979e-11	2.307919e-7	5.017216e-9
47	8163019	7999291	NM_152459	C16orf89	0.599919	1.351971e-11	2.342560e-7	4.984171e-9
48	8163019	8170648	NM_001711	BGN	0.599017	1.476939e-11	2.559091e-7	5.331441e-9
49	8163019	8033043	NM_000150	FUT6	0.598878	1.497028e-11	2.593900e-7	5.293674e-9
50	8163019	8101253	NM_032693	NAA11	0.598699	1.523513e-11	2.639791e-7	5.279581e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation