[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4957	7903920	NM_001025199	CHI3L2		chitinase 3-like 2

Fetching correlation data, please wait...
Getting list of correlations for id 4957.
Getting list of p-values for id 4957.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.100 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7903920	7991630	NM_078474	TM2D3	0.540083	2.747793e-9	4.761101e-5	4.761101e-5
2	7903920	8102050	NM_178833	NHEDC2	0.520825	1.229778e-8	2.130836e-4	1.065418e-4
3	7903920	7982187	NM_005503	APBA2	0.498303	6.329310e-8	1.096680e-3	3.655599e-4
4	7903920	7903393	NM_001400	S1PR1	0.492818	9.268491e-8	1.605951e-3	4.014878e-4
5	7903920	7914996	BX538212	MEAF6	0.490756	1.067866e-7	1.850292e-3	3.700583e-4
6	7903920	7933561	NM_003631	PARG	0.490542	1.083657e-7	1.877653e-3	3.129421e-4
7	7903920	7981919	NM_022807	SNRPN	0.482270	1.894652e-7	3.282864e-3	4.689806e-4
8	7903920	8107814	NM_016048	ISOC1	0.480543	2.125098e-7	3.682158e-3	4.602697e-4
9	7903920	7993889	BC027604	C16orf52	0.479527	2.272949e-7	3.938339e-3	4.375932e-4
10	7903920	7950810	NM_206927	SYTL2	0.476462	2.780471e-7	4.817722e-3	4.817722e-4
11	7903920	8059854	NM_005737	ARL4C	0.475741	2.914563e-7	5.050062e-3	4.590966e-4
12	7903920	8100026	NM_006095	ATP8A1	0.473845	3.297491e-7	5.713562e-3	4.761302e-4
13	7903920	7904287	NM_001767	CD2	0.472888	3.508249e-7	6.078743e-3	4.675956e-4
14	7903920	7944185	NM_000073	CD3G	0.470722	4.034199e-7	6.990057e-3	4.992898e-4
15	7903920	8042207	NM_152516	COMMD1	0.469851	4.266125e-7	7.391914e-3	4.927943e-4
16	7903920	8047038	NM_000534	PMS1	0.469090	4.478972e-7	7.760715e-3	4.850447e-4
17	7903920	8111925	NM_001014279	C5orf39	0.468706	4.590001e-7	7.953094e-3	4.678291e-4
18	7903920	7974835	NM_006255	PRKCH	0.468639	4.609667e-7	7.987171e-3	4.437317e-4
19	7903920	8107750	NM_130809	PRRC1	0.467589	4.928920e-7	8.540339e-3	4.494915e-4
20	7903920	7938816	NM_019028	ZDHHC13	0.466606	5.246431e-7	9.090491e-3	4.545245e-4
21	7903920	7973298	X58769	TRAV8-3	0.465664	5.568942e-7	9.649307e-3	4.594908e-4
22	7903920	8091757	NM_173084	TRIM59	0.459175	8.358371e-7	1.448255e-2	6.582977e-4
23	7903920	7919407	NM_001143883	PPIAL4B	0.458243	8.854354e-7	1.534194e-2	6.670408e-4
24	7903920	7984263	NM_016395	PTPLAD1	0.457985	8.996712e-7	1.558860e-2	6.495251e-4
25	7903920	8159945	NM_016282	AK3	0.457868	9.061959e-7	1.570166e-2	6.280662e-4
26	7903920	8162827	NR_024532	ALG2	0.457657	9.180147e-7	1.590644e-2	6.117862e-4
27	7903920	8106516	NM_152405	JMY	0.455769	1.031008e-6	1.786428e-2	6.616399e-4
28	7903920	8022110	NM_001143823	ZFP161	0.455396	1.054790e-6	1.827635e-2	6.527268e-4
29	7903920	7923007	NM_015984	UCHL5	0.454532	1.111970e-6	1.926711e-2	6.643831e-4
30	7903920	8074371	NM_022719	DGCR14	-0.454268	1.130059e-6	1.958053e-2	6.526843e-4
31	7903920	7970569	NM_014363	SACS	0.453137	1.210603e-6	2.097612e-2	6.766491e-4
32	7903920	8016858	NM_004645	COIL	0.452331	1.271257e-6	2.202707e-2	6.883460e-4
33	7903920	8090448	NM_003707	RUVBL1	0.451913	1.303854e-6	2.259188e-2	6.846024e-4
34	7903920	8006602	NM_002984	CCL4	0.451570	1.331234e-6	2.306629e-2	6.784202e-4
35	7903920	7951752	NM_020886	USP28	0.451547	1.333041e-6	2.309760e-2	6.599314e-4
36	7903920	7939087	BC047775	C11orf46	0.451334	1.350326e-6	2.339710e-2	6.499195e-4
37	7903920	7925823	NM_012341	GTPBP4	0.449570	1.501755e-6	2.602092e-2	7.032680e-4
38	7903920	8081710	NM_017699	SIDT1	0.449434	1.514084e-6	2.623453e-2	6.903825e-4
39	7903920	7899604	NM_016505	ZCCHC17	0.449281	1.528101e-6	2.647740e-2	6.789077e-4
40	7903920	7939524	NM_000401	EXT2	0.448375	1.613352e-6	2.795455e-2	6.988638e-4
41	7903920	8014891	NM_012481	IKZF3	0.446825	1.769765e-6	3.066471e-2	7.479198e-4
42	7903920	7992828	NM_001012631	IL32	0.445627	1.900379e-6	3.292786e-2	7.839966e-4
43	7903920	8162449	NM_031486	ZNF484	0.445058	1.965586e-6	3.405771e-2	7.920397e-4
44	7903920	7929116	NM_006413	RPP30	0.444957	1.977426e-6	3.426286e-2	7.787014e-4
45	7903920	7919157	NM_001143883	PPIAL4B	0.443452	2.161219e-6	3.744744e-2	8.321653e-4
46	7903920	7899753	NM_005356	LCK	0.442230	2.322218e-6	4.023708e-2	8.747191e-4
47	7903920	8146278	NM_032237	SGK196	0.442134	2.335383e-6	4.046518e-2	8.609614e-4
48	7903920	8136727			0.442101	2.339954e-6	4.054438e-2	8.446747e-4
49	7903920	8020930	NM_018255	ELP2	0.440219	2.612192e-6	4.526145e-2	9.237031e-4
50	7903920	8056766	NM_003705	SLC25A12	0.439889	2.662961e-6	4.614113e-2	9.228226e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation