[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2261	8138865	NM_001883	CRHR2		corticotropin releasing hormone receptor 2

Fetching correlation data, please wait...
Getting list of correlations for id 2261.
Getting list of p-values for id 2261.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8138865	8039362	NM_178837	C19orf51	0.782161	6.859835e-23	1.188604e-18	1.188604e-18
2	8138865	8025375	NM_005624	CCL25	0.776506	2.195468e-22	3.804087e-18	1.902043e-18
3	8138865	8064242	NR_027686	NCRNA00176	0.770024	7.993096e-22	1.384964e-17	4.616546e-18
4	8138865	8121209	NM_005604	POU3F2	0.769096	9.585300e-22	1.660845e-17	4.152112e-18
5	8138865	8065580	NM_080611	DUSP15	0.765804	1.812921e-21	3.141248e-17	6.282496e-18
6	8138865	8008201	NM_002507	NGFR	0.765506	1.919583e-21	3.326062e-17	5.543436e-18
7	8138865	7927367	NM_001040084	ANXA8	0.763455	2.838523e-21	4.918310e-17	7.026157e-18
8	8138865	8156415	NM_006648	WNK2	0.763147	3.009239e-21	5.214109e-17	6.517636e-18
9	8138865	8034469	NM_032301	FBXW9	0.762945	3.126461e-21	5.417220e-17	6.019133e-18
10	8138865	7948920	NM_004790	SLC22A6	0.761976	3.754749e-21	6.505853e-17	6.505853e-18
11	8138865	8074131	NM_001080420	SHANK3	0.761855	3.841279e-21	6.655784e-17	6.050713e-18
12	8138865	8164554	NM_203434	IER5L	0.760995	4.514527e-21	7.822320e-17	6.518600e-18
13	8138865	8049536	NM_001137550	LRRFIP1	0.760084	5.353597e-21	9.276178e-17	7.135521e-18
14	8138865	7930264	NM_004210	NEURL	0.758797	6.801823e-21	1.178552e-16	8.418228e-18
15	8138865	8060134	NM_004321	KIF1A	0.758050	7.811180e-21	1.353443e-16	9.022954e-18
16	8138865	8096556	NM_015143	METAP1	-0.757625	8.448726e-21	1.463911e-16	9.149442e-18
17	8138865	8062948	NM_014276	RBPJL	0.757231	9.084902e-21	1.574141e-16	9.259653e-18
18	8138865	8064894	NM_152611	LRRN4	0.756779	9.872784e-21	1.710657e-16	9.503651e-18
19	8138865	7927307	NM_001630	ANXA8L2	0.755448	1.259869e-20	2.182974e-16	1.148934e-17
20	8138865	8024956	NM_198706	HSD11B1L	0.753422	1.820290e-20	3.154016e-16	1.577008e-17
21	8138865	8177323	NM_004676	PRY	0.753117	1.923257e-20	3.332428e-16	1.586870e-17
22	8138865	7914667	NM_052896	CSMD2	0.753028	1.954541e-20	3.386633e-16	1.539379e-17
23	8138865	7963880	NM_001144996	ITGA7	0.752022	2.342696e-20	4.059189e-16	1.764865e-17
24	8138865	8013112	NM_016084	RASD1	0.751979	2.360522e-20	4.090076e-16	1.704198e-17
25	8138865	7920744	NM_000298	PKLR	0.751451	2.595214e-20	4.496727e-16	1.798691e-17
26	8138865	8060604	NM_000915	OXT	0.751375	2.630590e-20	4.558023e-16	1.753086e-17
27	8138865	7992147	NM_021098	CACNA1H	0.751203	2.712813e-20	4.700492e-16	1.740923e-17
28	8138865	7942717	NM_000260	MYO7A	0.750925	2.851106e-20	4.940111e-16	1.764325e-17
29	8138865	7937433	NM_000797	DRD4	0.750381	3.141721e-20	5.443659e-16	1.877124e-17
30	8138865	8009951	NM_000213	ITGB4	0.750231	3.226596e-20	5.590722e-16	1.863574e-17
31	8138865	8064059	NM_020882	COL20A1	0.748335	4.515782e-20	7.824495e-16	2.524031e-17
32	8138865	7949080	NM_015080	NRXN2	0.748072	4.729787e-20	8.195301e-16	2.561032e-17
33	8138865	7955184	NM_006262	PRPH	0.747857	4.912651e-20	8.512150e-16	2.579439e-17
34	8138865	8153876	NM_025251	ARHGAP39	0.747809	4.954584e-20	8.584808e-16	2.524943e-17
35	8138865	8028719	NM_016941	DLL3	0.747128	5.583922e-20	9.675261e-16	2.764360e-17
36	8138865	8030448	NM_001136052	CPT1C	0.744716	8.506539e-20	1.473928e-15	4.094244e-17
37	8138865	7937560	NM_002457	MUC2	0.743323	1.082374e-19	1.875430e-15	5.068730e-17
38	8138865	8037563	NM_006663	PPP1R13L	0.743249	1.096212e-19	1.899407e-15	4.998439e-17
39	8138865	8148796	NM_001008271	SCXA	0.742833	1.177610e-19	2.040445e-15	5.231911e-17
40	8138865	8148821	NM_001008271	SCXA	0.742833	1.177610e-19	2.040445e-15	5.101113e-17
41	8138865	8165538	NM_001033113	ENTPD8	0.742613	1.223174e-19	2.119394e-15	5.169254e-17
42	8138865	7935983	NM_005029	PITX3	0.742381	1.272911e-19	2.205573e-15	5.251364e-17
43	8138865	7937483	NR_002585	SNORA52	0.740973	1.619433e-19	2.805991e-15	6.525560e-17
44	8138865	7897860	NM_001243	TNFRSF8	0.740773	1.675561e-19	2.903244e-15	6.598283e-17
45	8138865	8030721	NM_002975	CLEC11A	0.740477	1.762189e-19	3.053344e-15	6.785209e-17
46	8138865	8132070	NM_002047	GARS	-0.740011	1.907678e-19	3.305434e-15	7.185726e-17
47	8138865	8073941	ENST00000411210		0.739833	1.966022e-19	3.406527e-15	7.247930e-17
48	8138865	7913450	NM_005529	HSPG2	0.739334	2.139520e-19	3.707146e-15	7.723220e-17
49	8138865	7968260	NM_145657	GSX1	0.739023	2.255322e-19	3.907797e-15	7.975096e-17
50	8138865	8141648	NM_015831	ACHE	0.738263	2.563517e-19	4.441806e-15	8.883613e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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