[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1080	8177323	NM_004676	PRY		PTPN13-like, Y-linked

Fetching correlation data, please wait...
Getting list of correlations for id 1080.
Getting list of p-values for id 1080.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177323	7963880	NM_001144996	ITGA7	0.790116	1.257757e-23	2.179316e-19	2.179316e-19
2	8177323	7914667	NM_052896	CSMD2	0.779510	1.188647e-22	2.059569e-18	1.029785e-18
3	8177323	7918313	NM_001010985	MYBPHL	0.768131	1.156576e-21	2.004000e-17	6.679999e-18
4	8177323	7995310	ENST00000319817		0.765079	2.083218e-21	3.609591e-17	9.023978e-18
5	8177323	8035648	NM_001001524	TM6SF2	0.756079	1.122636e-20	1.945191e-16	3.890382e-17
6	8177323	8138865	NM_001883	CRHR2	0.753117	1.923257e-20	3.332428e-16	5.554047e-17
7	8177323	7960099	NM_170683	P2RX2	0.749887	3.430526e-20	5.944073e-16	8.491533e-17
8	8177323	7955184	NM_006262	PRPH	0.748041	4.755971e-20	8.240671e-16	1.030084e-16
9	8177323	7908812	NM_004767	GPR37L1	0.746556	6.172601e-20	1.069527e-15	1.188363e-16
10	8177323	7962625	NM_001098531	RAPGEF3	0.745707	7.160002e-20	1.240614e-15	1.240614e-16
11	8177323	8003939	NM_003963	TM4SF5	0.744392	8.998663e-20	1.559198e-15	1.417453e-16
12	8177323	8104998	NM_018034	WDR70	-0.742804	1.183673e-19	2.050950e-15	1.709125e-16
13	8177323	8054872	NM_014553	TFCP2L1	0.739263	2.165370e-19	3.751936e-15	2.886105e-16
14	8177323	8125234	NM_019105	TNXB	0.737313	3.007727e-19	5.211488e-15	3.722492e-16
15	8177323	8065580	NM_080611	DUSP15	0.736948	3.197444e-19	5.540211e-15	3.693474e-16
16	8177323	8156415	NM_006648	WNK2	0.736211	3.616669e-19	6.266603e-15	3.916627e-16
17	8177323	8060134	NM_004321	KIF1A	0.735296	4.211980e-19	7.298098e-15	4.292999e-16
18	8177323	7937560	NM_002457	MUC2	0.735262	4.235652e-19	7.339114e-15	4.077285e-16
19	8177323	7936882	NM_001146340	NKX1-2	0.734738	4.620549e-19	8.006025e-15	4.213697e-16
20	8177323	7984016	NM_207322	C2CD4A	0.733838	5.362158e-19	9.291011e-15	4.645505e-16
21	8177323	7949021	NM_173587	RCOR2	0.733809	5.388342e-19	9.336380e-15	4.445895e-16
22	8177323	7923635	NM_014935	PLEKHA6	0.733495	5.674205e-19	9.831694e-15	4.468952e-16
23	8177323	7970241	NM_000504	F10	0.732959	6.198373e-19	1.073992e-14	4.669531e-16
24	8177323	8111216	ENST00000426411		0.732807	6.355154e-19	1.101158e-14	4.588156e-16
25	8177323	8115691	NM_003062	SLIT3	0.732136	7.094086e-19	1.229192e-14	4.916769e-16
26	8177323	8075200	NM_012265	RHBDD3	0.731685	7.637760e-19	1.323395e-14	5.089980e-16
27	8177323	7931519	NM_152643	KNDC1	0.730573	9.157104e-19	1.586651e-14	5.876487e-16
28	8177323	8148821	NM_001008271	SCXA	0.730465	9.318827e-19	1.614673e-14	5.766690e-16
29	8177323	8148796	NM_001008271	SCXA	0.730465	9.318827e-19	1.614673e-14	5.567838e-16
30	8177323	8138474	NM_198956	SP8	0.730251	9.649438e-19	1.671958e-14	5.573194e-16
31	8177323	7992845	NM_003456	ZNF205	0.730030	1.000137e-18	1.732938e-14	5.590121e-16
32	8177323	8053142	NM_033046	RTKN	0.729782	1.041306e-18	1.804271e-14	5.638346e-16
33	8177323	8030448	NM_001136052	CPT1C	0.729752	1.046326e-18	1.812969e-14	5.493844e-16
34	8177323	7953150	NM_003213	TEAD4	0.728577	1.265269e-18	2.192332e-14	6.448034e-16
35	8177323	8038299	NM_033142	CGB7	0.728307	1.321622e-18	2.289975e-14	6.542785e-16
36	8177323	7998015	NM_032451	SPIRE2	0.728116	1.362886e-18	2.361472e-14	6.559644e-16
37	8177323	7955305	NM_001652	AQP6	0.727860	1.420050e-18	2.460521e-14	6.650058e-16
38	8177323	8041696	NM_022437	ABCG8	0.727800	1.433901e-18	2.484520e-14	6.538209e-16
39	8177323	7927367	NM_001040084	ANXA8	0.727791	1.435982e-18	2.488126e-14	6.379810e-16
40	8177323	8093826	NM_000683	ADRA2C	0.727740	1.447808e-18	2.508616e-14	6.271541e-16
41	8177323	7998878	NM_022119	PRSS22	0.727705	1.455885e-18	2.522611e-14	6.152711e-16
42	8177323	8072436	NM_001002837	INPP5J	0.727377	1.534538e-18	2.658894e-14	6.330700e-16
43	8177323	8016168	NM_133373	PLCD3	0.725841	1.961743e-18	3.399112e-14	7.904913e-16
44	8177323	8033462	NM_206833	CTXN1	0.725509	2.068418e-18	3.583947e-14	8.145334e-16
45	8177323	8086222	NM_001099404	SCN5A	0.725279	2.145326e-18	3.717207e-14	8.260459e-16
46	8177323	8038280	NM_000737	CGB	0.724857	2.294170e-18	3.975108e-14	8.641539e-16
47	8177323	8012220	NM_006942	SOX15	0.724632	2.377278e-18	4.119109e-14	8.764062e-16
48	8177323	7927307	NM_001630	ANXA8L2	0.724451	2.446544e-18	4.239127e-14	8.831515e-16
49	8177323	8028719	NM_016941	DLL3	0.724405	2.464444e-18	4.270142e-14	8.714576e-16
50	8177323	8107406	ENST00000410774		0.724145	2.567950e-18	4.449487e-14	8.898975e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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