[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4892	7905220	NM_004425	ECM1		extracellular matrix protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 4892.
Getting list of p-values for id 4892.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.175 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7905220	7913450	NM_005529	HSPG2	0.779945	1.086685e-22	1.882899e-18	1.882899e-18
2	7905220	8090044	NM_001031702	SEMA5B	0.764381	2.380213e-21	4.124195e-17	2.062098e-17
3	7905220	8125234	NM_019105	TNXB	0.761110	4.418739e-21	7.656349e-17	2.552116e-17
4	7905220	8044933	NM_005270	GLI2	0.760071	5.366923e-21	9.299267e-17	2.324817e-17
5	7905220	7969372	ENST00000362412		0.758930	6.637082e-21	1.150007e-16	2.300014e-17
6	7905220	7922823	NM_025191	EDEM3	-0.755246	1.307111e-20	2.264832e-16	3.774720e-17
7	7905220	7937560	NM_002457	MUC2	0.755140	1.332556e-20	2.308920e-16	3.298457e-17
8	7905220	8075118	NM_001887	CRYBB1	0.754528	1.489593e-20	2.581019e-16	3.226273e-17
9	7905220	7977216	NM_015656	KIF26A	0.749648	3.579035e-20	6.201394e-16	6.890438e-17
10	7905220	8078738	NM_005109	OXSR1	-0.749304	3.804535e-20	6.592118e-16	6.592118e-17
11	7905220	8110821	NM_001044	SLC6A3	0.748875	4.104385e-20	7.111668e-16	6.465153e-17
12	7905220	8163599	NM_015404	DFNB31	0.747968	4.817675e-20	8.347585e-16	6.956321e-17
13	7905220	8036989	ENST00000412510		0.747463	5.265299e-20	9.123183e-16	7.017833e-17
14	7905220	7945688	NR_003512	INS-IGF2	0.745255	7.746409e-20	1.342220e-15	9.587288e-17
15	7905220	8029458	NM_001039213	CEACAM16	0.744673	8.569953e-20	1.484916e-15	9.899438e-17
16	7905220	8028407	NM_000540	RYR1	0.743195	1.106472e-19	1.917184e-15	1.198240e-16
17	7905220	8072436	NM_001002837	INPP5J	0.742680	1.209047e-19	2.094915e-15	1.232303e-16
18	7905220	7906284	NM_144702	C1orf92	0.742276	1.295893e-19	2.245394e-15	1.247441e-16
19	7905220	8093112	NM_015562	UBXN7	-0.742103	1.335048e-19	2.313237e-15	1.217493e-16
20	7905220	8049166	NM_005199	CHRNG	0.741979	1.363626e-19	2.362754e-15	1.181377e-16
21	7905220	8137330	ENST00000356058		0.740870	1.648296e-19	2.856002e-15	1.360001e-16
22	7905220	8016168	NM_133373	PLCD3	0.740611	1.722550e-19	2.984662e-15	1.356665e-16
23	7905220	7955184	NM_006262	PRPH	0.740271	1.825254e-19	3.162617e-15	1.375051e-16
24	7905220	8107406	ENST00000410774		0.739898	1.944478e-19	3.369197e-15	1.403832e-16
25	7905220	7996027	NM_002996	CX3CL1	0.739236	2.175532e-19	3.769544e-15	1.507818e-16
26	7905220	8162833	NM_015051	ERP44	-0.738890	2.306214e-19	3.995977e-15	1.536914e-16
27	7905220	7908437	NM_024529	CDC73	-0.738420	2.496862e-19	4.326313e-15	1.602338e-16
28	7905220	7991939	NM_145294	WDR90	0.737980	2.688810e-19	4.658902e-15	1.663893e-16
29	7905220	8067409	NM_005560	LAMA5	0.736381	3.515118e-19	6.090645e-15	2.100222e-16
30	7905220	8032197	NM_152769	C19orf26	0.736145	3.656810e-19	6.336154e-15	2.112051e-16
31	7905220	8079021	NM_001904	CTNNB1	-0.735722	3.923563e-19	6.798358e-15	2.193019e-16
32	7905220	7919564	ENST00000365297		0.734864	4.524911e-19	7.840313e-15	2.450098e-16
33	7905220	7974771	NM_022495	C14orf135	-0.734821	4.557204e-19	7.896267e-15	2.392808e-16
34	7905220	8146637	NM_152758	YTHDF3	-0.733761	5.431168e-19	9.410585e-15	2.767819e-16
35	7905220	7994052	NM_006043	HS3ST2	0.733757	5.434361e-19	9.416117e-15	2.690319e-16
36	7905220	8156247	NM_178828	C9orf79	0.733486	5.683193e-19	9.847268e-15	2.735352e-16
37	7905220	8007154	NM_021939	FKBP10	0.733460	5.707169e-19	9.888811e-15	2.672652e-16
38	7905220	8090772	NM_007027	TOPBP1	-0.733413	5.751986e-19	9.966467e-15	2.622754e-16
39	7905220	7975113	NM_145165	CHURC1	-0.732600	6.574794e-19	1.139214e-14	2.921063e-16
40	7905220	8064394	ENST00000217256		0.732186	7.036618e-19	1.219235e-14	3.048087e-16
41	7905220	8032051	NM_182577	ODF3L2	0.732185	7.037956e-19	1.219467e-14	2.974309e-16
42	7905220	8156783	NM_001855	COL15A1	0.731910	7.362000e-19	1.275614e-14	3.037176e-16
43	7905220	7987701	NM_016642	SPTBN5	0.731789	7.509434e-19	1.301160e-14	3.025953e-16
44	7905220	8037732	NM_001029861	NANOS2	0.731786	7.512662e-19	1.301719e-14	2.958452e-16
45	7905220	8006239	NM_001042492	NF1	-0.731647	7.685873e-19	1.331731e-14	2.959403e-16
46	7905220	8125805	NM_000841	GRM4	0.731635	7.700980e-19	1.334349e-14	2.900758e-16
47	7905220	8148333	NM_015137	EFR3A	-0.731602	7.742619e-19	1.341564e-14	2.854391e-16
48	7905220	7963880	NM_001144996	ITGA7	0.731520	7.847510e-19	1.359738e-14	2.832788e-16
49	7905220	7998414	ENST00000428636		0.731504	7.867585e-19	1.363216e-14	2.782074e-16
50	7905220	8153838	NM_004260	RECQL4	0.731483	7.894096e-19	1.367810e-14	2.735620e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation