[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4798	7898773	NM_020526	EPHA8		EPH receptor A8

Fetching correlation data, please wait...
Getting list of correlations for id 4798.
Getting list of p-values for id 4798.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.153 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7898773	7947363	NM_024424	WT1	0.807334	2.455523e-25	4.254685e-21	4.254685e-21
2	7898773	7937560	NM_002457	MUC2	0.802727	7.311828e-25	1.266920e-20	6.334602e-21
3	7898773	8137330	ENST00000356058		0.797723	2.316062e-24	4.013041e-20	1.337680e-20
4	7898773	8172580	NM_005183	CACNA1F	0.788051	1.967451e-23	3.409003e-19	8.522507e-20
5	7898773	8006063	NM_152345	ANKRD13B	0.778933	1.338312e-22	2.318893e-18	4.637787e-19
6	7898773	8010379	NM_024110	CARD14	0.775610	2.631286e-22	4.559229e-18	7.598716e-19
7	7898773	8039362	NM_178837	C19orf51	0.775113	2.908682e-22	5.039873e-18	7.199819e-19
8	7898773	7991939	NM_145294	WDR90	0.773775	3.803850e-22	6.590930e-18	8.238663e-19
9	7898773	7997264	NM_001906	CTRB1	0.773704	3.858457e-22	6.685548e-18	7.428387e-19
10	7898773	8121209	NM_005604	POU3F2	0.772072	5.338777e-22	9.250500e-18	9.250500e-19
11	7898773	7992460	NM_001099456	NPW	0.770957	6.654591e-22	1.153041e-17	1.048219e-18
12	7898773	7935983	NM_005029	PITX3	0.770499	7.281981e-22	1.261749e-17	1.051457e-18
13	7898773	7966690	NM_016569	TBX3	0.769431	8.978284e-22	1.555667e-17	1.196667e-18
14	7898773	8071444	NM_144704	AIFM3	0.766907	1.465962e-21	2.540073e-17	1.814338e-18
15	7898773	7984802	NM_001130136	ISLR2	0.765115	2.068818e-21	3.584642e-17	2.389761e-18
16	7898773	8031084	NM_031895	CACNG8	0.765043	2.097423e-21	3.634205e-17	2.271378e-18
17	7898773	8159086	NM_014694	ADAMTSL2	0.764525	2.315858e-21	4.012687e-17	2.360404e-18
18	7898773	8027222	NM_153221	CILP2	0.764462	2.343482e-21	4.060551e-17	2.255862e-18
19	7898773	8115691	NM_003062	SLIT3	0.764100	2.510831e-21	4.350517e-17	2.289746e-18
20	7898773	7993165			0.764007	2.555904e-21	4.428614e-17	2.214307e-18
21	7898773	8087453	NM_198722	AMIGO3	0.763724	2.697077e-21	4.673225e-17	2.225345e-18
22	7898773	8089729	NM_001015887	IGSF11	0.763157	3.003727e-21	5.204558e-17	2.365708e-18
23	7898773	8144078	NM_000193	SHH	0.762547	3.371136e-21	5.841167e-17	2.539638e-18
24	7898773	7937363	NM_007183	PKP3	0.762135	3.643865e-21	6.313725e-17	2.630719e-18
25	7898773	8086183	NM_002078	GOLGA4	0.761362	4.214382e-21	7.302261e-17	2.920904e-18
26	7898773	7918313	NM_001010985	MYBPHL	0.761151	4.384626e-21	7.597241e-17	2.922016e-18
27	7898773	7945688	NR_003512	INS-IGF2	0.760510	4.943689e-21	8.565930e-17	3.172567e-18
28	7898773	8174469	NM_012282	KCNE1L	0.760035	5.402532e-21	9.360967e-17	3.343202e-18
29	7898773	8076169	NM_014293	NPTXR	0.759748	5.700256e-21	9.876833e-17	3.405804e-18
30	7898773	8159142	NM_000093	COL5A1	0.758386	7.341060e-21	1.271985e-16	4.239951e-18
31	7898773	7996819	NM_001793	CDH3	0.757772	8.223195e-21	1.424833e-16	4.596235e-18
32	7898773	8021199	NM_002747	MAPK4	0.757317	8.943433e-21	1.549629e-16	4.842590e-18
33	7898773	7897089	NM_014638	PLCH2	0.757249	9.054699e-21	1.568908e-16	4.754266e-18
34	7898773	7952897	NM_015232	IQSEC3	0.757074	9.351791e-21	1.620385e-16	4.765838e-18
35	7898773	8060604	NM_000915	OXT	0.756859	9.729880e-21	1.685896e-16	4.816847e-18
36	7898773	8002845	NM_001025200	CTRB2	0.756849	9.746833e-21	1.688834e-16	4.691205e-18
37	7898773	8030181	NM_033378	CGB2	0.756654	1.010226e-20	1.750418e-16	4.730859e-18
38	7898773	8074131	NM_001080420	SHANK3	0.756273	1.083425e-20	1.877251e-16	4.940134e-18
39	7898773	8110382	NM_030567	PRR7	0.756097	1.118788e-20	1.938524e-16	4.970574e-18
40	7898773	8037513	NM_138568	EXOC3L2	0.755440	1.261748e-20	2.186232e-16	5.465579e-18
41	7898773	8002792	NM_024306	FA2H	0.754496	1.498407e-20	2.596290e-16	6.332414e-18
42	7898773	8010696	NM_148896	NPB	0.754396	1.525724e-20	2.643622e-16	6.294337e-18
43	7898773	8019693	NM_148896	NPB	0.754396	1.525724e-20	2.643622e-16	6.147957e-18
44	7898773	8029693	NM_006732	FOSB	0.753964	1.650027e-20	2.859002e-16	6.497731e-18
45	7898773	8009145	NM_030779	KCNH6	0.753833	1.689702e-20	2.927747e-16	6.506104e-18
46	7898773	7915385	NM_001956	EDN2	0.753289	1.864430e-20	3.230498e-16	7.022821e-18
47	7898773	8156783	NM_001855	COL15A1	0.753268	1.871669e-20	3.243040e-16	6.900085e-18
48	7898773	7998724	NM_020764	CASKIN1	0.752899	2.000340e-20	3.465989e-16	7.220811e-18
49	7898773	7941203	NM_001004326	SLC22A20	0.751885	2.400686e-20	4.159668e-16	8.489118e-18
50	7898773	8028407	NM_000540	RYR1	0.751715	2.475123e-20	4.288645e-16	8.577290e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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