[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6606	8002792	NM_024306	FA2H		fatty acid 2-hydroxylase

Fetching correlation data, please wait...
Getting list of correlations for id 6606.
Getting list of p-values for id 6606.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8002792	7978718	NM_006364	SEC23A	-0.819261	1.264290e-26	2.190635e-22	2.190635e-22
2	8002792	7971820	NM_016075	VPS36	-0.788307	1.862002e-23	3.226292e-19	1.613146e-19
3	8002792	8126018	NM_007271	STK38	-0.787631	2.153620e-23	3.731577e-19	1.243859e-19
4	8002792	8092888	NM_138399	TMEM44	0.786953	2.490446e-23	4.315195e-19	1.078799e-19
5	8002792	8091048	NR_023350	COPB2	-0.785668	3.276435e-23	5.677080e-19	1.135416e-19
6	8002792	8001149	NM_018206	VPS35	-0.785345	3.509126e-23	6.080262e-19	1.013377e-19
7	8002792	8049598	NM_194312	ESPNL	0.783164	5.561369e-23	9.636184e-19	1.376598e-19
8	8002792	7973902	NM_003136	SRP54	-0.782829	5.965187e-23	1.033588e-18	1.291985e-19
9	8002792	8062213	NM_016436	PHF20	-0.781608	7.698768e-23	1.333966e-18	1.482184e-19
10	8002792	8132070	NM_002047	GARS	-0.781604	7.704162e-23	1.334900e-18	1.334900e-19
11	8002792	7944285	NM_001655	ARCN1	-0.781516	7.846800e-23	1.359615e-18	1.236014e-19
12	8002792	7937667	NM_003957	BRSK2	0.781329	8.157615e-23	1.413470e-18	1.177892e-19
13	8002792	7931728	NM_015155	LARP4B	-0.780440	9.808901e-23	1.699588e-18	1.307376e-19
14	8002792	8070482	NR_027272	C21orf129	0.780272	1.015656e-22	1.759828e-18	1.257020e-19
15	8002792	8081465	NM_001142568	BBX	-0.780096	1.053214e-22	1.824904e-18	1.216603e-19
16	8002792	7942553	NM_014752	SPCS2	-0.780046	1.064150e-22	1.843853e-18	1.152408e-19
17	8002792	8131087	NM_001080461	UNCX	0.778681	1.409081e-22	2.441514e-18	1.436185e-19
18	8002792	7969935	NM_000123	ERCC5	-0.775891	2.486453e-22	4.308278e-18	2.393488e-19
19	8002792	8046564	NM_024501	HOXD1	0.775640	2.615690e-22	4.532206e-18	2.385371e-19
20	8002792	8137330	ENST00000356058		0.775566	2.654931e-22	4.600200e-18	2.300100e-19
21	8002792	8121277	NM_001624	AIM1	-0.773197	4.268910e-22	7.396741e-18	3.522258e-19
22	8002792	8074063	NM_024866	ADM2	0.772545	4.860527e-22	8.421836e-18	3.828107e-19
23	8002792	7930956	NM_007190	SEC23IP	-0.772104	5.305278e-22	9.192456e-18	3.996720e-19
24	8002792	8028119	NM_001083961	WDR62	0.771970	5.447098e-22	9.438187e-18	3.932578e-19
25	8002792	7967304	NM_198261	RSRC2	-0.771678	5.771992e-22	1.000113e-17	4.000452e-19
26	8002792	8013259	ENST00000300983		0.771090	6.481579e-22	1.123063e-17	4.319474e-19
27	8002792	8082688	NM_015268	DNAJC13	-0.771089	6.483525e-22	1.123400e-17	4.160742e-19
28	8002792	7927854	NM_012207	HNRNPH3	-0.770738	6.947186e-22	1.203739e-17	4.299068e-19
29	8002792	8018922	NM_004762	CYTH1	-0.770643	7.078905e-22	1.226562e-17	4.229524e-19
30	8002792	8152148	NM_015902	UBR5	-0.770486	7.300447e-22	1.264948e-17	4.216495e-19
31	8002792	7937560	NM_002457	MUC2	0.770380	7.453457e-22	1.291461e-17	4.166002e-19
32	8002792	8078435	NM_001039111	TRIM71	0.770330	7.528329e-22	1.304434e-17	4.076355e-19
33	8002792	7989735	NM_006660	CLPX	-0.770026	7.990751e-22	1.384557e-17	4.195629e-19
34	8002792	8110894	NM_017755	NSUN2	-0.769958	8.097613e-22	1.403073e-17	4.126687e-19
35	8002792	8039362	NM_178837	C19orf51	0.769909	8.176327e-22	1.416712e-17	4.047749e-19
36	8002792	8048703	NM_032338	LLPH	-0.769814	8.329590e-22	1.443268e-17	4.009078e-19
37	8002792	7972808	AK093771	CARKD	0.769759	8.418987e-22	1.458758e-17	3.942589e-19
38	8002792	8061815	NM_182658	C20orf185	0.769494	8.867557e-22	1.536482e-17	4.043372e-19
39	8002792	8067409	NM_005560	LAMA5	0.769060	9.652100e-22	1.672419e-17	4.288255e-19
40	8002792	8021199	NM_002747	MAPK4	0.769004	9.757769e-22	1.690729e-17	4.226822e-19
41	8002792	7980833	NM_032560	SMEK1	-0.768264	1.127105e-21	1.952934e-17	4.763255e-19
42	8002792	7992460	NM_001099456	NPW	0.768076	1.169046e-21	2.025606e-17	4.822872e-19
43	8002792	7992181	NM_003294	TPSAB1	0.766774	1.504242e-21	2.606400e-17	6.061394e-19
44	8002792	7998668	NM_144603	NOXO1	0.766695	1.527343e-21	2.646427e-17	6.014606e-19
45	8002792	7927028	NM_153368	GJD4	0.766579	1.561881e-21	2.706270e-17	6.013934e-19
46	8002792	8151842	NM_015496	KIAA1429	-0.766571	1.564050e-21	2.710030e-17	5.891369e-19
47	8002792	8068883	NM_000394	CRYAA	0.765992	1.748604e-21	3.029806e-17	6.446397e-19
48	8002792	8044417	NM_032824	TMEM87B	-0.765919	1.773270e-21	3.072544e-17	6.401134e-19
49	8002792	8005512	NM_002767	PRPSAP2	-0.765893	1.782027e-21	3.087717e-17	6.301464e-19
50	8002792	7979931	NM_005466	MED6	-0.765837	1.801497e-21	3.121454e-17	6.242909e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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