[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3422	8028119	NM_001083961	WDR62		WD repeat domain 62

Fetching correlation data, please wait...
Getting list of correlations for id 3422.
Getting list of p-values for id 3422.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8028119	7905020	NM_000798	DRD5	0.828000	1.247592e-27	2.161702e-23	2.161702e-23
2	8028119	7951703	NM_000795	DRD2	0.801642	9.413777e-25	1.631125e-20	8.155626e-21
3	8028119	7971820	NM_016075	VPS36	-0.801532	9.657132e-25	1.673291e-20	5.577638e-21
4	8028119	8078600	NM_006756	TCEA1	-0.796967	2.749215e-24	4.763564e-20	1.190891e-20
5	8028119	7969935	NM_000123	ERCC5	-0.796436	3.099651e-24	5.370765e-20	1.074153e-20
6	8028119	8047641	NM_177538	CYP20A1	-0.796265	3.220829e-24	5.580731e-20	9.301218e-21
7	8028119	8006148	NM_004871	GOSR1	-0.794965	4.312875e-24	7.472919e-20	1.067560e-20
8	8028119	8053728	NM_000798	DRD5	0.794654	4.622993e-24	8.010259e-20	1.001282e-20
9	8028119	8035801	ENST00000364165		0.792973	6.717314e-24	1.163909e-19	1.293232e-20
10	8028119	7978718	NM_006364	SEC23A	-0.792540	7.393112e-24	1.281005e-19	1.281005e-20
11	8028119	7904879	ENST00000364272		0.790139	1.251661e-23	2.168752e-19	1.971593e-20
12	8028119	8049598	NM_194312	ESPNL	0.787177	2.374144e-23	4.113679e-19	3.428066e-20
13	8028119	7941709	NM_002896	RBM4	-0.786292	2.868599e-23	4.970421e-19	3.823401e-20
14	8028119	7896929	NM_022834	VWA1	0.785589	3.331843e-23	5.773084e-19	4.123631e-20
15	8028119	8087951	NM_018165	PBRM1	-0.784799	3.940143e-23	6.827085e-19	4.551390e-20
16	8028119	8010583	NR_027255	LOC388428	0.783440	5.247437e-23	9.092234e-19	5.682646e-20
17	8028119	8137330	ENST00000356058		0.781346	8.128870e-23	1.408489e-18	8.285231e-20
18	8028119	8004152	NM_015253	WSCD1	0.780513	9.662497e-23	1.674221e-18	9.301227e-20
19	8028119	7949080	NM_015080	NRXN2	0.779635	1.158434e-22	2.007218e-18	1.056430e-19
20	8028119	7967304	NM_198261	RSRC2	-0.778214	1.550721e-22	2.686934e-18	1.343467e-19
21	8028119	7896822	NM_198576	AGRN	0.777473	1.803708e-22	3.125285e-18	1.488231e-19
22	8028119	7949796	NM_206997	GPR152	0.776959	2.002556e-22	3.469828e-18	1.577195e-19
23	8028119	7906197	NM_021817	HAPLN2	0.776253	2.310962e-22	4.004204e-18	1.740958e-19
24	8028119	7954279	NM_153207	AEBP2	-0.776172	2.348943e-22	4.070013e-18	1.695839e-19
25	8028119	8131087	NM_001080461	UNCX	0.776072	2.396893e-22	4.153096e-18	1.661239e-19
26	8028119	8146243	NM_032410	HOOK3	-0.775754	2.556175e-22	4.429084e-18	1.703494e-19
27	8028119	8001185	NM_005880	DNAJA2	-0.775663	2.603613e-22	4.511281e-18	1.670845e-19
28	8028119	8039477	BC031875	FAM71E2	0.775488	2.696865e-22	4.672858e-18	1.668878e-19
29	8028119	8132943	NM_001762	CCT6A	-0.775366	2.764473e-22	4.790003e-18	1.651725e-19
30	8028119	8018600	NM_014230	SRP68	-0.774414	3.347367e-22	5.799982e-18	1.933327e-19
31	8028119	8074108	NM_012324	MAPK8IP2	0.774191	3.499875e-22	6.064233e-18	1.956204e-19
32	8028119	7998601	NM_001146006	IGFALS	0.773416	4.086910e-22	7.081389e-18	2.212934e-19
33	8028119	8150818	NM_006756	TCEA1	-0.772088	5.321528e-22	9.220612e-18	2.794125e-19
34	8028119	8002792	NM_024306	FA2H	0.771970	5.447098e-22	9.438187e-18	2.775937e-19
35	8028119	8027222	NM_153221	CILP2	0.771762	5.676585e-22	9.835819e-18	2.810234e-19
36	8028119	8169519	NM_019045	WDR44	-0.770836	6.814189e-22	1.180695e-17	3.279707e-19
37	8028119	8163784	NM_012164	FBXW2	-0.770167	7.772702e-22	1.346776e-17	3.639935e-19
38	8028119	7980833	NM_032560	SMEK1	-0.770015	8.008059e-22	1.387556e-17	3.651464e-19
39	8028119	8052562	NM_006430	CCT4	-0.768341	1.110365e-21	1.923930e-17	4.933154e-19
40	8028119	8137336	NM_004769	ACCN3	0.768144	1.153749e-21	1.999102e-17	4.997754e-19
41	8028119	7993165			0.767675	1.263531e-21	2.189320e-17	5.339805e-19
42	8028119	8134180	NM_019004	ANKIB1	-0.767628	1.275130e-21	2.209417e-17	5.260516e-19
43	8028119	7973902	NM_003136	SRP54	-0.767208	1.383097e-21	2.396492e-17	5.573236e-19
44	8028119	8013259	ENST00000300983		0.767019	1.434709e-21	2.485921e-17	5.649821e-19
45	8028119	8136539	NM_016019	LUC7L2	-0.766705	1.524399e-21	2.641326e-17	5.869613e-19
46	8028119	7903519	NM_018061	PRPF38B	-0.766583	1.560671e-21	2.704175e-17	5.878640e-19
47	8028119	8111629	NM_153485	NUP155	-0.766505	1.584284e-21	2.745089e-17	5.840615e-19
48	8028119	8147483	NM_178812	MTDH	-0.766235	1.668778e-21	2.891491e-17	6.023940e-19
49	8028119	8088219	NM_001112736	C3orf63	-0.766060	1.725825e-21	2.990338e-17	6.102730e-19
50	8028119	7989253	NM_024755	SLTM	-0.765986	1.750511e-21	3.033110e-17	6.066220e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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