[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
535	7936923	M21191	ALDOAP2		aldolase A, fructose-bisphosphate pseudogene 2

Fetching correlation data, please wait...
Getting list of correlations for id 535.
Getting list of p-values for id 535.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.105 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7936923	8087860	NM_007284	TWF2	0.557180	6.696603e-10	1.160320e-5	1.160320e-5
2	7936923	8172333	NM_002621	CFP	0.540378	2.683499e-9	4.649700e-5	2.324850e-5
3	7936923	7994737	NM_000034	ALDOA	0.537175	3.466609e-9	6.006593e-5	2.002198e-5
4	7936923	7897745	NM_020350	AGTRAP	0.533800	4.527063e-9	7.844043e-5	1.961011e-5
5	7936923	8003467	NM_001083314	CHMP1A	0.531956	5.231492e-9	9.064606e-5	1.812921e-5
6	7936923	8019296	NM_016538	SIRT7	0.527783	7.233634e-9	1.253372e-4	2.088953e-5
7	7936923	8032909	NM_005817	PLIN3	0.522810	1.058254e-8	1.833636e-4	2.619480e-5
8	7936923	8006762	NM_032351	MRPL45	-0.521957	1.128962e-8	1.956152e-4	2.445190e-5
9	7936923	7995040	NM_001122957	BCKDK	0.519000	1.410608e-8	2.444161e-4	2.715734e-5
10	7936923	8170882	NM_001183	ATP6AP1	0.518963	1.414552e-8	2.450995e-4	2.450995e-5
11	7936923	8001030	NM_013258	PYCARD	0.513724	2.088099e-8	3.618049e-4	3.289136e-5
12	7936923	7947969	NM_015308	FNBP4	-0.507651	3.252883e-8	5.636270e-4	4.696891e-5
13	7936923	7926084	NM_001001973	ATP5C1	-0.504238	4.157365e-8	7.203467e-4	5.541128e-5
14	7936923	8011407	NM_014604	TAX1BP3	0.503970	4.237742e-8	7.342735e-4	5.244811e-5
15	7936923	7986110	NM_002005	FES	0.503651	4.335382e-8	7.511916e-4	5.007944e-5
16	7936923	8035456	NM_145256	LRRC25	0.497656	6.622934e-8	1.147556e-3	7.172223e-5
17	7936923	8165258	NM_006412	AGPAT2	0.496155	7.354532e-8	1.274320e-3	7.495998e-5
18	7936923	8036483	NM_033557	YIF1B	0.492905	9.212893e-8	1.596318e-3	8.868433e-5
19	7936923	8126666	NM_004556	NFKBIE	0.491219	1.034512e-7	1.792499e-3	9.434206e-5
20	7936923	8030782	NM_014441	SIGLEC9	0.490954	1.053496e-7	1.825392e-3	9.126960e-5
21	7936923	8034565	NM_001375	DNASE2	0.488589	1.238083e-7	2.145226e-3	1.021536e-4
22	7936923	8138151	NR_002822	MGC72080	-0.487964	1.291802e-7	2.238306e-3	1.017412e-4
23	7936923	8111210	CR614585		0.487106	1.369166e-7	2.372355e-3	1.031459e-4
24	7936923	7945620	NM_019009	TOLLIP	0.486279	1.447870e-7	2.508725e-3	1.045302e-4
25	7936923	7913990	NM_022078	GPATCH3	0.477629	2.575605e-7	4.462751e-3	1.785101e-4
26	7936923	8060353	NM_031229	RBCK1	0.476201	2.828263e-7	4.900531e-3	1.884820e-4
27	7936923	8073612	NM_000714	TSPO	0.475867	2.890622e-7	5.008581e-3	1.855030e-4
28	7936923	7901592	BC035374	C1orf83	-0.475584	2.944558e-7	5.102036e-3	1.822156e-4
29	7936923	8034210	NM_198536	TMEM205	0.475566	2.948043e-7	5.108074e-3	1.761405e-4
30	7936923	7949518	NM_198897	FIBP	0.475375	2.985032e-7	5.172165e-3	1.724055e-4
31	7936923	8110569	NM_003900	SQSTM1	0.475129	3.033268e-7	5.255743e-3	1.695401e-4
32	7936923	8092532	ENST00000422486		-0.474201	3.221952e-7	5.582676e-3	1.744586e-4
33	7936923	8035553	NM_007263	COPE	0.469612	4.331686e-7	7.505513e-3	2.274398e-4
34	7936923	7942439	NM_032871	RELT	0.468230	4.731571e-7	8.198393e-3	2.411292e-4
35	7936923	8025255	NM_006949	STXBP2	0.467870	4.841451e-7	8.388783e-3	2.396795e-4
36	7936923	8179028	AK128290	LOC554223	0.467071	5.093858e-7	8.826129e-3	2.451702e-4
37	7936923	7994769	NM_007074	CORO1A	0.466494	5.283669e-7	9.155012e-3	2.474328e-4
38	7936923	7903183	ENST00000415278		-0.465869	5.497079e-7	9.524789e-3	2.506523e-4
39	7936923	8010770	NM_001042422	SLC16A3	0.465543	5.611663e-7	9.723329e-3	2.493161e-4
40	7936923	8003322	NM_000101	CYBA	0.465380	5.669556e-7	9.823639e-3	2.455910e-4
41	7936923	7919619	NM_003516	HIST2H2AA3	0.464923	5.835713e-7	1.011154e-2	2.466229e-4
42	7936923	7905079	NM_003516	HIST2H2AA3	0.464923	5.835713e-7	1.011154e-2	2.407510e-4
43	7936923	8162438	NM_001003800	BICD2	0.460371	7.760314e-7	1.344630e-2	3.127045e-4
44	7936923	7896754	AK290103	LOC100287934	-0.460298	7.796034e-7	1.350819e-2	3.070043e-4
45	7936923	8170906	NM_004699	FAM50A	0.458051	8.960091e-7	1.552515e-2	3.450033e-4
46	7936923	8137680	NM_006869	ADAP1	0.457489	9.276195e-7	1.607286e-2	3.494101e-4
47	7936923	7941179	NM_005186	CAPN1	0.456552	9.826039e-7	1.702558e-2	3.622463e-4
48	7936923	8143749	NM_207336	ZNF467	0.456389	9.925028e-7	1.719710e-2	3.582728e-4
49	7936923	7953321	NM_002342	LTBR	0.454725	1.098984e-6	1.904209e-2	3.886141e-4
50	7936923	8031973	NR_026052	MGC2752	0.454214	1.133781e-6	1.964502e-2	3.929004e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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