[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
459	7901460	NM_015696	GPX7		glutathione peroxidase 7

Fetching correlation data, please wait...
Getting list of correlations for id 459.
Getting list of p-values for id 459.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7901460	7913655	NM_002167	ID3	0.427071	5.535976e-6	9.592186e-2	9.592186e-2
2	7901460	8013319	NM_006613	GRAP	0.404423	1.879352e-5	3.256353e-1	1.628177e-1
3	7901460	7975455			-0.401085	2.233718e-5	3.870364e-1	1.290121e-1
4	7901460	7986789	NM_024490	ATP10A	0.394451	3.131735e-5	5.426357e-1	1.356589e-1
5	7901460	7981986	NR_003332	SNORD116-17	0.389950	3.922930e-5	6.797261e-1	1.359452e-1
6	7901460	7981982	NR_003332	SNORD116-17	0.389950	3.922930e-5	6.797261e-1	1.132877e-1
7	7901460	7929032	NM_000043	FAS	-0.389909	3.930885e-5	6.811044e-1	9.730062e-2
8	7901460	hsa-miR-150	MI0000479		0.381799	5.849800e-5	1.013595e+0	1.266993e-1
9	7901460	7981978	NR_003330	SNORD116-15	0.374733	8.202086e-5	1.421175e+0	1.579084e-1
10	7901460	8149250	NM_001080826	SGK223	0.370842	9.847569e-5	1.706288e+0	1.706288e-1
11	7901460	7904737	NM_001039888	ANKRD34A	0.369925	1.027775e-4	1.780825e+0	1.618932e-1
12	7901460	8155699	NM_000144	FXN	0.369546	1.046036e-4	1.812467e+0	1.510389e-1
13	7901460	8117598	NM_021968	HIST1H4J	0.366954	1.179417e-4	2.043575e+0	1.571981e-1
14	7901460	8018972	AK057217	TIMP2	-0.365908	1.237546e-4	2.144297e+0	1.531640e-1
15	7901460	8019357	NM_016286	DCXR	0.364761	1.304414e-4	2.260158e+0	1.506772e-1
16	7901460	8056215	AK093576		0.362342	1.456453e-4	2.523597e+0	1.577248e-1
17	7901460	8050060	NM_003310	TSSC1	0.362011	1.478549e-4	2.561882e+0	1.506989e-1
18	7901460	8008627	NM_005450	NOG	0.361864	1.488403e-4	2.578957e+0	1.432754e-1
19	7901460	8030362	NR_000020	SNORD33	0.359824	1.632116e-4	2.827967e+0	1.488403e-1
20	7901460	7990027	NR_026808	C15orf28	-0.358180	1.757190e-4	3.044683e+0	1.522342e-1
21	7901460	hsa-miR-342-3p			0.355624	1.969363e-4	3.412316e+0	1.624912e-1
22	7901460	7981953	NR_003318	SNORD116-3	0.354677	2.053834e-4	3.558678e+0	1.617581e-1
23	7901460	7981966	NR_003318	SNORD116-3	0.354677	2.053834e-4	3.558678e+0	1.547251e-1
24	7901460	8161024	NR_003051	RMRP	0.354507	2.069381e-4	3.585616e+0	1.494007e-1
25	7901460	8123362	BX647686	CCR6	-0.354191	2.098513e-4	3.636093e+0	1.454437e-1
26	7901460	7997940	NR_002450	SNORD68	0.354085	2.108405e-4	3.653233e+0	1.405090e-1
27	7901460	7990654	ENST00000331447		-0.353585	2.155393e-4	3.734650e+0	1.383204e-1
28	7901460	8010946	NM_015721	GEMIN4	0.353262	2.186336e-4	3.788265e+0	1.352952e-1
29	7901460	7981988	NR_003334	SNORD116-20	0.350019	2.520308e-4	4.366937e+0	1.505840e-1
30	7901460	8031097	NM_004542	NDUFA3	0.348630	2.677277e-4	4.638919e+0	1.546306e-1
31	7901460	8015031	NM_001838	CCR7	0.348529	2.689020e-4	4.659265e+0	1.502989e-1
32	7901460	8109283	NM_001543	NDST1	-0.348074	2.742639e-4	4.752171e+0	1.485053e-1
33	7901460	8136662	NM_004668	MGAM	-0.347721	2.784857e-4	4.825322e+0	1.462219e-1
34	7901460	8077171	NM_001130921	RABL2B	0.347518	2.809391e-4	4.867832e+0	1.431715e-1
35	7901460	8174970	NC_001807		0.346456	2.941289e-4	5.096372e+0	1.456106e-1
36	7901460	8112916	NC_001807		0.346456	2.941289e-4	5.096372e+0	1.415659e-1
37	7901460	7946565	NC_001807		0.346334	2.956677e-4	5.123035e+0	1.384604e-1
38	7901460	8072582	ENST00000459049		-0.345064	3.122579e-4	5.410492e+0	1.423814e-1
39	7901460	8104613	ENST00000330110		-0.344771	3.162050e-4	5.478884e+0	1.404842e-1
40	7901460	8117620	ENST00000303310		-0.343783	3.298606e-4	5.715495e+0	1.428874e-1
41	7901460	7975459	NM_015556	SIPA1L1	-0.343247	3.374908e-4	5.847703e+0	1.426269e-1
42	7901460	8045559			-0.342153	3.535747e-4	6.126389e+0	1.458664e-1
43	7901460	8036143	NM_001040425	U2AF1L4	0.340544	3.785045e-4	6.558347e+0	1.525197e-1
44	7901460	hsa-miR-146b-5p			0.337709	4.264244e-4	7.388656e+0	1.679240e-1
45	7901460	8133070	ENST00000384614		0.334529	4.867827e-4	8.434483e+0	1.874330e-1
46	7901460	8011112	ENST00000459614		-0.334375	4.898888e-4	8.488304e+0	1.845283e-1
47	7901460	7942453	NM_021200	PLEKHB1	0.333130	5.157509e-4	8.936416e+0	1.901365e-1
48	7901460	8163729	hsa-mir-147		-0.332563	5.279189e-4	9.147251e+0	1.905677e-1
49	7901460	7925523	ENST00000390855		-0.332298	5.337022e-4	9.247458e+0	1.887236e-1
50	7901460	8132690	ENST00000390855		-0.332298	5.337022e-4	9.247458e+0	1.849492e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation