[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4475	7913655	NM_002167	ID3		inhibitor of DNA binding 3, dominant negative helix-loop-helix protein

Fetching correlation data, please wait...
Getting list of correlations for id 4475.
Getting list of p-values for id 4475.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.089 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7913655	8013319	NM_006613	GRAP	0.600531	1.273075e-11	2.205856e-7	2.205856e-7
2	7913655	8157139	ENST00000306634		0.556846	6.889388e-10	1.193724e-5	5.968621e-6
3	7913655	8029136	NM_001783	CD79A	0.537211	3.456707e-9	5.989437e-5	1.996479e-5
4	7913655	7898276	ENST00000321418		0.536525	3.650206e-9	6.324711e-5	1.581178e-5
5	7913655	8144625	NM_001715	BLK	0.534348	4.335808e-9	7.512655e-5	1.502531e-5
6	7913655	8161024	NR_003051	RMRP	0.524340	9.419600e-9	1.632134e-4	2.720223e-5
7	7913655	8052022	AY779046	RPL18A	0.524108	9.588188e-9	1.661345e-4	2.373350e-5
8	7913655	7971858	ENST00000334406		0.523640	9.935426e-9	1.721511e-4	2.151889e-5
9	7913655	7942453	NM_021200	PLEKHB1	0.522691	1.067851e-8	1.850266e-4	2.055851e-5
10	7913655	8017511	NM_000626	CD79B	0.516079	1.754139e-8	3.039397e-4	3.039397e-5
11	7913655	8060503	NR_002738	SNORD57	0.487790	1.307148e-7	2.264895e-3	2.058996e-4
12	7913655	8031097	NM_004542	NDUFA3	0.486883	1.390007e-7	2.408465e-3	2.007054e-4
13	7913655	8030671	NM_003121	SPIB	0.486504	1.426010e-7	2.470847e-3	1.900651e-4
14	7913655	8123362	BX647686	CCR6	-0.486234	1.452325e-7	2.516443e-3	1.797460e-4
15	7913655	8019357	NM_016286	DCXR	0.483973	1.690818e-7	2.929680e-3	1.953120e-4
16	7913655	8030362	NR_000020	SNORD33	0.483113	1.791013e-7	3.103288e-3	1.939555e-4
17	7913655	7981978	NR_003330	SNORD116-15	0.480346	2.153031e-7	3.730557e-3	2.194445e-4
18	7913655	7981986	NR_003332	SNORD116-17	0.479233	2.317555e-7	4.015628e-3	2.230905e-4
19	7913655	7981982	NR_003332	SNORD116-17	0.479233	2.317555e-7	4.015628e-3	2.113489e-4
20	7913655	8053379	AK296608	C2orf89	0.478525	2.428188e-7	4.207322e-3	2.103661e-4
21	7913655	7984562	NM_001003	RPLP1	0.477536	2.591357e-7	4.490044e-3	2.138116e-4
22	7913655	8027258	AK298173	ZNF90	0.477441	2.607560e-7	4.518119e-3	2.053691e-4
23	7913655	8024299	NM_001018	RPS15	0.476584	2.758307e-7	4.779319e-3	2.077965e-4
24	7913655	8129095	ENST00000435100		0.475870	2.890187e-7	5.007828e-3	2.086595e-4
25	7913655	8149250	NM_001080826	SGK223	0.472739	3.542384e-7	6.137889e-3	2.455156e-4
26	7913655	7923917	NM_005449	FAIM3	0.470281	4.149851e-7	7.190446e-3	2.765556e-4
27	7913655	8109141	NM_152407	GRPEL2	0.466936	5.137639e-7	8.901986e-3	3.297032e-4
28	7913655	8154359	AY779046	RPL18A	0.465442	5.647369e-7	9.785197e-3	3.494713e-4
29	7913655	8128247	NM_021813	BACH2	0.462703	6.709271e-7	1.162515e-2	4.008674e-4
30	7913655	7981988	NR_003334	SNORD116-20	0.461984	7.018016e-7	1.216012e-2	4.053372e-4
31	7913655	7981964	NR_003323	SNORD116-8	0.457224	9.428551e-7	1.633685e-2	5.269952e-4
32	7913655	7981976	NR_003329	SNORD116-14	0.455305	1.060693e-6	1.837863e-2	5.743323e-4
33	7913655	8023043	NM_024430	PSTPIP2	-0.453591	1.177657e-6	2.040526e-2	6.183413e-4
34	7913655	7942824	NM_001031	RPS28	0.453238	1.203182e-6	2.084754e-2	6.131629e-4
35	7913655	8085984	NM_017784	OSBPL10	0.452978	1.222338e-6	2.117946e-2	6.051273e-4
36	7913655	7999025	NM_016292	TRAP1	0.452606	1.250283e-6	2.166366e-2	6.017683e-4
37	7913655	hsa-miR-31	MI0000089		0.452082	1.290606e-6	2.236232e-2	6.043871e-4
38	7913655	8025395	NM_001031	RPS28	0.450683	1.404441e-6	2.433476e-2	6.403883e-4
39	7913655	7913593	NM_003196	TCEA3	0.450305	1.436811e-6	2.489562e-2	6.383492e-4
40	7913655	8069178	NR_027673	ADARB1	0.450105	1.454184e-6	2.519664e-2	6.299161e-4
41	7913655	7897685	NM_013319	UBIAD1	0.447704	1.679331e-6	2.909777e-2	7.097018e-4
42	7913655	8072582	ENST00000459049		-0.445835	1.877046e-6	3.252358e-2	7.743710e-4
43	7913655	8080093	NM_013286	RBM15B	0.444789	1.997154e-6	3.460469e-2	8.047603e-4
44	7913655	7925954	NM_001047160	NET1	0.443771	2.120908e-6	3.674897e-2	8.352039e-4
45	7913655	8097586	NM_207123	GAB1	-0.442772	2.249451e-6	3.897623e-2	8.661385e-4
46	7913655	7899029	NM_020379	MAN1C1	0.442660	2.264379e-6	3.923489e-2	8.529324e-4
47	7913655	7923889	NM_006893	LGTN	0.442119	2.337398e-6	4.050009e-2	8.617041e-4
48	7913655	8005471	NM_001031	RPS28	0.441709	2.394271e-6	4.148553e-2	8.642818e-4
49	7913655	7946149	NM_001164	APBB1	0.441085	2.483341e-6	4.302885e-2	8.781397e-4
50	7913655	7929593	NR_026712	RPL13AP5	0.440908	2.509264e-6	4.347802e-2	8.695604e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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