[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
520	8119515	NM_000409	GUCA1A		guanylate cyclase activator 1A (retina)

Fetching correlation data, please wait...
Getting list of correlations for id 520.
Getting list of p-values for id 520.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8119515	8062427	NM_080607	VSTM2L	0.637650	2.579545e-13	4.469578e-9	4.469578e-9
2	8119515	7899101	NM_006314	CNKSR1	0.631861	4.904880e-13	8.498685e-9	4.249343e-9
3	8119515	7934544	NM_144589	COMTD1	0.630818	5.498783e-13	9.527741e-9	3.175914e-9
4	8119515	8165083	NM_178138	LHX3	0.627831	7.612022e-13	1.318935e-8	3.297338e-9
5	8119515	8044263	NM_006267	RANBP2	-0.625421	9.869784e-13	1.710137e-8	3.420275e-9
6	8119515	7938090	NM_176875	CCKBR	0.624457	1.094351e-12	1.896182e-8	3.160304e-9
7	8119515	7939465	NM_016142	HSD17B12	-0.621886	1.438955e-12	2.493278e-8	3.561825e-9
8	8119515	7938907	NM_004211	SLC6A5	0.615991	2.670319e-12	4.626862e-8	5.783578e-9
9	8119515	7912968	NM_152232	TAS1R2	0.615454	2.823219e-12	4.891791e-8	5.435323e-9
10	8119515	8001329	NM_004352	CBLN1	0.614345	3.166101e-12	5.485904e-8	5.485904e-9
11	8119515	7905025	NM_000798	DRD5	0.614034	3.269385e-12	5.664863e-8	5.149875e-9
12	8119515	8043283	NM_018433	KDM3A	-0.609670	5.108941e-12	8.852261e-8	7.376885e-9
13	8119515	8024467	NM_182973	TMPRSS9	0.609070	5.429471e-12	9.407644e-8	7.236649e-9
14	8119515	8093386	NM_002477	MYL5	0.608447	5.782696e-12	1.001968e-7	7.156912e-9
15	8119515	7991815	NM_006849	PDIA2	0.607876	6.125623e-12	1.061387e-7	7.075911e-9
16	8119515	7931859	NM_017422	CALML5	0.605782	7.561157e-12	1.310122e-7	8.188260e-9
17	8119515	8108453	NM_032289	PSD2	0.604324	8.746367e-12	1.515483e-7	8.914606e-9
18	8119515	7949444	NM_005714	KCNK7	0.603026	9.950425e-12	1.724110e-7	9.578390e-9
19	8119515	8153101	NM_152888	COL22A1	0.601772	1.126554e-11	1.951981e-7	1.027358e-8
20	8119515	7897257	NM_207396	RNF207	0.600652	1.258030e-11	2.179789e-7	1.089894e-8
21	8119515	8093792	NM_001528	HGFAC	0.600431	1.285639e-11	2.227627e-7	1.060775e-8
22	8119515	8010719	NM_144999	LRRC45	0.599385	1.424676e-11	2.468536e-7	1.122062e-8
23	8119515	8105353	NM_015360	SKIV2L2	-0.596640	1.861696e-11	3.225760e-7	1.402504e-8
24	8119515	8161583	NM_001099279	FOXD4L2	0.596142	1.953820e-11	3.385384e-7	1.410577e-8
25	8119515	8155440	NM_001099279	FOXD4L2	0.596142	1.953820e-11	3.385384e-7	1.354153e-8
26	8119515	7945475	NM_021924	CDHR5	0.595084	2.164245e-11	3.749988e-7	1.442303e-8
27	8119515	8151842	NM_015496	KIAA1429	-0.594330	2.327164e-11	4.032277e-7	1.493436e-8
28	8119515	8039511	NM_024710	ISOC2	0.593957	2.412252e-11	4.179710e-7	1.492754e-8
29	8119515	7922756	NM_015039	NMNAT2	0.593626	2.490121e-11	4.314632e-7	1.487804e-8
30	8119515	7970232	NM_000131	F7	0.593162	2.603690e-11	4.511414e-7	1.503805e-8
31	8119515	8114767	NM_032420	PCDH1	0.592606	2.746045e-11	4.758072e-7	1.534862e-8
32	8119515	8132832	AK057400	LOC100129427	0.591365	3.091387e-11	5.356447e-7	1.673890e-8
33	8119515	8048541	NM_001927	DES	0.590929	3.222426e-11	5.583498e-7	1.691969e-8
34	8119515	8044634	NM_012184	FOXD4L1	0.590166	3.464688e-11	6.003265e-7	1.765666e-8
35	8119515	8008736	NM_006151	LPO	0.589895	3.554842e-11	6.159475e-7	1.759850e-8
36	8119515	8053725	NM_000798	DRD5	0.589822	3.579658e-11	6.202474e-7	1.722909e-8
37	8119515	7963502	NM_175078	KRT77	0.589593	3.658197e-11	6.338558e-7	1.713124e-8
38	8119515	8019331	NM_001145113	MYADML2	0.588200	4.172763e-11	7.230146e-7	1.902670e-8
39	8119515	8066590	NM_003279	TNNC2	0.587832	4.319599e-11	7.484569e-7	1.919120e-8
40	8119515	7930454	NM_145341	PDCD4	-0.587365	4.513679e-11	7.820851e-7	1.955213e-8
41	8119515	8152323	NM_001568	EIF3E	-0.587013	4.665362e-11	8.083673e-7	1.971628e-8
42	8119515	7938687	NM_005013	NUCB2	-0.586019	5.120907e-11	8.872996e-7	2.112618e-8
43	8119515	7995631	NM_005611	RBL2	-0.585818	5.218198e-11	9.041572e-7	2.102691e-8
44	8119515	8159734	NM_000718	CACNA1B	0.585447	5.401854e-11	9.359793e-7	2.127226e-8
45	8119515	7950023	NM_005117	FGF19	0.584782	5.747525e-11	9.958737e-7	2.213053e-8
46	8119515	8053046	NM_003584	DUSP11	-0.584201	6.067055e-11	1.051239e-6	2.285301e-8
47	8119515	8070269	NM_006052	DSCR3	-0.583168	6.677256e-11	1.156968e-6	2.461634e-8
48	8119515	8049961	NM_183421	FBXO25	-0.582994	6.785992e-11	1.175809e-6	2.449602e-8
49	8119515	7927307	NM_001630	ANXA8L2	0.582896	6.847610e-11	1.186485e-6	2.421399e-8
50	8119515	7947991	NM_015231	NUP160	-0.582648	7.007043e-11	1.214110e-6	2.428221e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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