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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4856 7963502 NM_175078 KRT77 link to infopage keratin 77

Fetching correlation data, please wait...
Getting list of correlations for id 4856.
Getting list of p-values for id 4856.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7963502 7937560 NM_002457 MUC2 link to infopage 0.738037 2.663196e-19 4.614519e-15 4.614519e-15
2 7963502 8007259 ENST00000225928 link to infopage 0.733402 5.762331e-19 9.984391e-15 4.992196e-15
3 7963502 8153101 NM_152888 COL22A1 link to infopage 0.733350 5.812055e-19 1.007055e-14 3.356849e-15
4 7963502 7913450 NM_005529 HSPG2 link to infopage 0.731816 7.476238e-19 1.295408e-14 3.238519e-15
5 7963502 8082928 NM_001002026 CLDN18 link to infopage 0.728524 1.276164e-18 2.211210e-14 4.422420e-15
6 7963502 8110821 NM_001044 SLC6A3 link to infopage 0.726715 1.706299e-18 2.956505e-14 4.927508e-15
7 7963502 7910265 NM_001098623 OBSCN link to infopage 0.725562 2.050851e-18 3.553509e-14 5.076441e-15
8 7963502 7987701 NM_016642 SPTBN5 link to infopage 0.725520 2.064576e-18 3.577290e-14 4.471613e-15
9 7963502 8134263 NM_000089 COL1A2 link to infopage 0.725231 2.161854e-18 3.745844e-14 4.162049e-15
10 7963502 8137151 NM_198455 SSPO link to infopage 0.724569 2.401323e-18 4.160773e-14 4.160773e-15
11 7963502 7912250 EF592573 MIR34A link to infopage 0.723066 3.044493e-18 5.275194e-14 4.795631e-15
12 7963502 8174389 NM_033641 COL4A6 link to infopage 0.722157 3.511631e-18 6.084603e-14 5.070502e-15
13 7963502 8159734 NM_000718 CACNA1B link to infopage 0.722070 3.560072e-18 6.168537e-14 4.745028e-15
14 7963502 8046922 NM_000090 COL3A1 link to infopage 0.721835 3.693394e-18 6.399544e-14 4.571103e-15
15 7963502 8086985 NM_000094 COL7A1 link to infopage 0.720003 4.914689e-18 8.515682e-14 5.677121e-15
16 7963502 8001329 NM_004352 CBLN1 link to infopage 0.719785 5.084474e-18 8.809867e-14 5.506167e-15
17 7963502 8033487 NM_032447 FBN3 link to infopage 0.717430 7.313545e-18 1.267218e-13 7.454223e-15
18 7963502 8137783 NM_001097620 TMEM184A link to infopage 0.717427 7.317030e-18 1.267822e-13 7.043454e-15
19 7963502 8032699 NM_015174 ZFR2 link to infopage 0.715101 1.044032e-17 1.808994e-13 9.521020e-15
20 7963502 7903632 NM_001408 CELSR2 link to infopage 0.714829 1.088205e-17 1.885533e-13 9.427665e-15
21 7963502 7912863 NR_002729 MST1P9 link to infopage 0.714725 1.105431e-17 1.915381e-13 9.120863e-15
22 7963502 8131056 NM_017781 CYP2W1 link to infopage 0.714648 1.118463e-17 1.937960e-13 8.808909e-15
23 7963502 8049509 NM_015893 PRLH link to infopage 0.713094 1.414893e-17 2.451584e-13 1.065906e-14
24 7963502 8175871 NM_000425 L1CAM link to infopage 0.712035 1.659215e-17 2.874922e-13 1.197884e-14
25 7963502 7898809 NM_017449 EPHB2 link to infopage 0.711805 1.717641e-17 2.976156e-13 1.190462e-14
26 7963502 7976844 hsa-mir-134 link to infopage 0.711548 1.784910e-17 3.092714e-13 1.189505e-14
27 7963502 8043114 NM_031283 TCF7L1 link to infopage 0.710346 2.136177e-17 3.701353e-13 1.370872e-14
28 7963502 7896822 NM_198576 AGRN link to infopage 0.709259 2.510917e-17 4.350666e-13 1.553809e-14
29 7963502 8035408 NM_000923 PDE4C link to infopage 0.709120 2.563256e-17 4.441354e-13 1.531501e-14
30 7963502 7945688 NR_003512 INS-IGF2 link to infopage 0.709046 2.591700e-17 4.490639e-13 1.496880e-14
31 7963502 7970727 NM_001265 CDX2 link to infopage 0.708702 2.727140e-17 4.725315e-13 1.524295e-14
32 7963502 8089714 NM_002338 LSAMP link to infopage 0.707696 3.163690e-17 5.481725e-13 1.713039e-14
33 7963502 7934367 NM_004034 ANXA7 link to infopage -0.706670 3.679078e-17 6.374738e-13 1.931739e-14
34 7963502 7966189 NM_213596 FOXN4 link to infopage 0.706136 3.978686e-17 6.893869e-13 2.027609e-14
35 7963502 8024754 NM_032607 CREB3L3 link to infopage 0.705758 4.204867e-17 7.285773e-13 2.081650e-14
36 7963502 7916654 NM_181712 KANK4 link to infopage 0.705753 4.208292e-17 7.291708e-13 2.025474e-14
37 7963502 8015349 NM_002276 KRT19 link to infopage 0.705706 4.236878e-17 7.341239e-13 1.984119e-14
38 7963502 7938090 NM_176875 CCKBR link to infopage 0.704630 4.957195e-17 8.589332e-13 2.260351e-14
39 7963502 8176149 NM_139250 CTAG1A link to infopage 0.703748 5.634522e-17 9.762936e-13 2.503317e-14
40 7963502 8170965 NM_139250 CTAG1A link to infopage 0.703748 5.634522e-17 9.762936e-13 2.440734e-14
41 7963502 7991815 NM_006849 PDIA2 link to infopage 0.703743 5.638508e-17 9.769842e-13 2.382888e-14
42 7963502 8110688 NM_004174 SLC9A3 link to infopage 0.703591 5.764220e-17 9.987665e-13 2.378015e-14
43 7963502 7946860 NM_000352 ABCC8 link to infopage 0.703007 6.272950e-17 1.086914e-12 2.527707e-14
44 7963502 8155661 NM_199135 FOXD4L3 link to infopage 0.702963 6.312547e-17 1.093775e-12 2.485852e-14
45 7963502 8156783 NM_001855 COL15A1 link to infopage 0.702683 6.572816e-17 1.138872e-12 2.530826e-14
46 7963502 8034747 ENST00000343945 link to infopage 0.702402 6.845159e-17 1.186061e-12 2.578393e-14
47 7963502 8001014 NM_173502 PRSS36 link to infopage 0.702285 6.961842e-17 1.206278e-12 2.566550e-14
48 7963502 8050924 NM_001145168 GPR113 link to infopage 0.702158 7.089793e-17 1.228449e-12 2.559268e-14
49 7963502 8028407 NM_000540 RYR1 link to infopage 0.701169 8.173203e-17 1.416171e-12 2.890145e-14
50 7963502 8061572 NM_032609 COX4I2 link to infopage 0.700209 9.377280e-17 1.624801e-12 3.249603e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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