[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2588	8131506	NM_152745	NXPH1		neurexophilin 1

Fetching correlation data, please wait...
Getting list of correlations for id 2588.
Getting list of p-values for id 2588.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8131506	7996027	NM_002996	CX3CL1	0.798701	1.853334e-24	3.211272e-20	3.211272e-20
2	8131506	8107897	NM_003687	PDLIM4	0.790179	1.240751e-23	2.149849e-19	1.074925e-19
3	8131506	8001014	NM_173502	PRSS36	0.788260	1.880667e-23	3.258631e-19	1.086210e-19
4	8131506	8038299	NM_033142	CGB7	0.787073	2.427690e-23	4.206459e-19	1.051615e-19
5	8131506	7937560	NM_002457	MUC2	0.786615	2.677396e-23	4.639125e-19	9.278250e-20
6	8131506	8067409	NM_005560	LAMA5	0.784867	3.883935e-23	6.729694e-19	1.121616e-19
7	8131506	7897089	NM_014638	PLCH2	0.782114	6.927245e-23	1.200284e-18	1.714691e-19
8	8131506	8131056	NM_017781	CYP2W1	0.778697	1.404548e-22	2.433660e-18	3.042074e-19
9	8131506	8064059	NM_020882	COL20A1	0.777859	1.667353e-22	2.889023e-18	3.210025e-19
10	8131506	8060126	NM_198998	AQP12A	0.777017	1.979304e-22	3.429540e-18	3.429540e-19
11	8131506	8115691	NM_003062	SLIT3	0.776632	2.139879e-22	3.707769e-18	3.370699e-19
12	8131506	8150928	NM_003580	NSMAF	-0.776340	2.270634e-22	3.934328e-18	3.278607e-19
13	8131506	8049509	NM_015893	PRLH	0.773444	4.063931e-22	7.041573e-18	5.416595e-19
14	8131506	7945688	NR_003512	INS-IGF2	0.773382	4.114281e-22	7.128815e-18	5.092010e-19
15	8131506	8049729	NM_198998	AQP12A	0.773303	4.179424e-22	7.241689e-18	4.827793e-19
16	8131506	8008228	NM_138281	DLX4	0.770321	7.541335e-22	1.306687e-17	8.166795e-19
17	8131506	8075118	NM_001887	CRYBB1	0.770063	7.932442e-22	1.374454e-17	8.085025e-19
18	8131506	7953150	NM_003213	TEAD4	0.768269	1.126117e-21	1.951222e-17	1.084012e-18
19	8131506	8024605	NM_021938	CELF5	0.766974	1.447226e-21	2.507608e-17	1.319794e-18
20	8131506	7923360	NM_003281	TNNI1	0.766477	1.592777e-21	2.759805e-17	1.379903e-18
21	8131506	7927367	NM_001040084	ANXA8	0.764673	2.250989e-21	3.900289e-17	1.857280e-18
22	8131506	7955305	NM_001652	AQP6	0.764608	2.279310e-21	3.949360e-17	1.795164e-18
23	8131506	7927307	NM_001630	ANXA8L2	0.764554	2.302853e-21	3.990153e-17	1.734849e-18
24	8131506	8004842	NM_173728	ARHGEF15	0.764216	2.456328e-21	4.256079e-17	1.773366e-18
25	8131506	8030448	NM_001136052	CPT1C	0.764027	2.546289e-21	4.411954e-17	1.764782e-18
26	8131506	7996219	NM_020465	NDRG4	0.763954	2.581750e-21	4.473398e-17	1.720538e-18
27	8131506	8018379	NM_020753	CASKIN2	0.763512	2.808185e-21	4.865742e-17	1.802127e-18
28	8131506	8036079	NM_033317	DMKN	0.763294	2.926480e-21	5.070712e-17	1.810969e-18
29	8131506	8039605	NM_001005850	ZNF835	0.762915	3.144447e-21	5.448383e-17	1.878753e-18
30	8131506	8042335	NM_003375	VDAC2	-0.762860	3.177234e-21	5.505194e-17	1.835065e-18
31	8131506	8165538	NM_001033113	ENTPD8	0.762256	3.561259e-21	6.170593e-17	1.990514e-18
32	8131506	7936882	NM_001146340	NKX1-2	0.761752	3.916613e-21	6.786316e-17	2.120724e-18
33	8131506	7998414	ENST00000428636		0.761663	3.982582e-21	6.900619e-17	2.091097e-18
34	8131506	8059748	NM_004826	ECEL1	0.761607	4.024555e-21	6.973346e-17	2.050984e-18
35	8131506	8028407	NM_000540	RYR1	0.760264	5.176762e-21	8.969775e-17	2.562793e-18
36	8131506	7998434	NM_003294	TPSAB1	0.759842	5.601049e-21	9.704938e-17	2.695816e-18
37	8131506	8153346	NM_023946	LYNX1	0.759565	5.897832e-21	1.021917e-16	2.761939e-18
38	8131506	7992181	NM_003294	TPSAB1	0.759547	5.917594e-21	1.025342e-16	2.698267e-18
39	8131506	8049942	NM_080741	NEU4	0.758860	6.723053e-21	1.164903e-16	2.986932e-18
40	8131506	8037732	NM_001029861	NANOS2	0.758816	6.778732e-21	1.174551e-16	2.936377e-18
41	8131506	8163599	NM_015404	DFNB31	0.758286	7.477481e-21	1.295623e-16	3.160057e-18
42	8131506	8062782	NM_032883	TOX2	0.757840	8.120583e-21	1.407053e-16	3.350127e-18
43	8131506	8174469	NM_012282	KCNE1L	0.757805	8.172514e-21	1.416051e-16	3.293143e-18
44	8131506	8164853	NM_020469	ABO	0.757649	8.411750e-21	1.457504e-16	3.312509e-18
45	8131506	7913450	NM_005529	HSPG2	0.757293	8.981917e-21	1.556297e-16	3.458437e-18
46	8131506	8032699	NM_015174	ZFR2	0.757147	9.227061e-21	1.598773e-16	3.475593e-18
47	8131506	8049799	NM_001001891	ANO7	0.756716	9.988614e-21	1.730727e-16	3.682398e-18
48	8131506	7997264	NM_001906	CTRB1	0.756555	1.028775e-20	1.782559e-16	3.713664e-18
49	8131506	8159036	NM_139025	ADAMTS13	0.755947	1.150000e-20	1.992604e-16	4.066540e-18
50	8131506	7935983	NM_005029	PITX3	0.755192	1.319919e-20	2.287024e-16	4.574048e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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