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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3642 7996219 NM_020465 NDRG4 link to infopage NDRG family member 4

Fetching correlation data, please wait...
Getting list of correlations for id 3642.
Getting list of p-values for id 3642.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.155 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7996219 8024605 NM_021938 CELF5 link to infopage 0.811062 9.937450e-26 1.721862e-21 1.721862e-21
2 7996219 8098740 NM_033178 DUX4 link to infopage 0.810814 1.056182e-25 1.830046e-21 9.150230e-22
3 7996219 7955019 NM_152641 ARID2 link to infopage -0.810329 1.189175e-25 2.060483e-21 6.868277e-22
4 7996219 7987325 NM_014691 AQR link to infopage -0.808250 1.969686e-25 3.412874e-21 8.532185e-22
5 7996219 8121209 NM_005604 POU3F2 link to infopage 0.807816 2.186836e-25 3.789131e-21 7.578262e-22
6 7996219 7936762 NM_001001976 ATE1 link to infopage -0.806503 2.996270e-25 5.191636e-21 8.652727e-22
7 7996219 7937560 NM_002457 MUC2 link to infopage 0.804027 5.389325e-25 9.338083e-21 1.334012e-21
8 7996219 8024306 NM_005883 APC2 link to infopage 0.803927 5.518267e-25 9.561501e-21 1.195188e-21
9 7996219 8098732 NM_033178 DUX4 link to infopage 0.803216 6.520843e-25 1.129866e-20 1.255407e-21
10 7996219 8039605 NM_001005850 ZNF835 link to infopage 0.803000 6.859672e-25 1.188575e-20 1.188575e-21
11 7996219 8115691 NM_003062 SLIT3 link to infopage 0.800689 1.174108e-24 2.034377e-20 1.849434e-21
12 7996219 8049942 NM_080741 NEU4 link to infopage 0.799823 1.433199e-24 2.483304e-20 2.069420e-21
13 7996219 8024048 NM_002777 PRTN3 link to infopage 0.797566 2.400001e-24 4.158482e-20 3.198832e-21
14 7996219 8148517 NM_001702 BAI1 link to infopage 0.796470 3.075917e-24 5.329642e-20 3.806887e-21
15 7996219 8107897 NM_003687 PDLIM4 link to infopage 0.795144 4.143330e-24 7.179149e-20 4.786099e-21
16 7996219 7929840 NM_003987 PAX2 link to infopage 0.794873 4.402054e-24 7.627439e-20 4.767149e-21
17 7996219 8166956 NM_021140 KDM6A link to infopage -0.792634 7.240975e-24 1.254644e-19 7.380258e-21
18 7996219 7923360 NM_003281 TNNI1 link to infopage 0.792153 8.051053e-24 1.395006e-19 7.750033e-21
19 7996219 8038299 NM_033142 CGB7 link to infopage 0.791733 8.831461e-24 1.530227e-19 8.053827e-21
20 7996219 7991828 ENST00000431654 link to infopage 0.791647 8.998783e-24 1.559219e-19 7.796096e-21
21 7996219 8053022 NM_001965 EGR4 link to infopage 0.790759 1.093208e-23 1.894201e-19 9.020005e-21
22 7996219 8083282 NM_032383 HPS3 link to infopage -0.790466 1.165538e-23 2.019527e-19 9.179668e-21
23 7996219 8052443 NM_014709 USP34 link to infopage -0.789758 1.359800e-23 2.356126e-19 1.024403e-20
24 7996219 7911435 NM_001014980 FAM132A link to infopage 0.789104 1.567289e-23 2.715642e-19 1.131517e-20
25 7996219 7952243 NM_015645 C1QTNF5 link to infopage 0.786873 2.533904e-23 4.390496e-19 1.756198e-20
26 7996219 7967420 NM_018183 SBNO1 link to infopage -0.786451 2.772873e-23 4.804558e-19 1.847907e-20
27 7996219 8171762 NM_004586 RPS6KA3 link to infopage -0.786385 2.812490e-23 4.873202e-19 1.804890e-20
28 7996219 8131087 NM_001080461 UNCX link to infopage 0.786355 2.830683e-23 4.904724e-19 1.751687e-20
29 7996219 8100251 NM_015030 FRYL link to infopage -0.784851 3.896555e-23 6.751561e-19 2.328124e-20
30 7996219 8131056 NM_017781 CYP2W1 link to infopage 0.784415 4.273356e-23 7.404443e-19 2.468148e-20
31 7996219 7936882 NM_001146340 NKX1-2 link to infopage 0.784364 4.319937e-23 7.485154e-19 2.414566e-20
32 7996219 8005328 NM_016239 MYO15A link to infopage 0.783857 4.806699e-23 8.328567e-19 2.602677e-20
33 7996219 7903239 NM_000028 AGL link to infopage -0.783823 4.841818e-23 8.389418e-19 2.542248e-20
34 7996219 8074131 NM_001080420 SHANK3 link to infopage 0.783496 5.186095e-23 8.985947e-19 2.642926e-20
35 7996219 7984641 NM_005744 ARIH1 link to infopage -0.783430 5.258451e-23 9.111318e-19 2.603234e-20
36 7996219 7974771 NM_022495 C14orf135 link to infopage -0.783177 5.545566e-23 9.608803e-19 2.669112e-20
37 7996219 8161437 BC119675 FAM27E3 link to infopage 0.782946 5.821122e-23 1.008626e-18 2.726016e-20
38 7996219 8161426 BC119675 FAM27E3 link to infopage 0.782946 5.821122e-23 1.008626e-18 2.654278e-20
39 7996219 8155569 BC119675 FAM27E3 link to infopage 0.782946 5.821122e-23 1.008626e-18 2.586220e-20
40 7996219 8067270 NM_153360 APCDD1L link to infopage 0.782675 6.161917e-23 1.067675e-18 2.669188e-20
41 7996219 8137336 NM_004769 ACCN3 link to infopage 0.782515 6.370812e-23 1.103871e-18 2.692367e-20
42 7996219 8166500 NM_003410 ZFX link to infopage -0.782471 6.430550e-23 1.114221e-18 2.652908e-20
43 7996219 8100902 NM_032217 ANKRD17 link to infopage -0.782137 6.894137e-23 1.194547e-18 2.778017e-20
44 7996219 8051670 NM_005633 SOS1 link to infopage -0.782102 6.945156e-23 1.203387e-18 2.734971e-20
45 7996219 8062108 NM_006404 PROCR link to infopage 0.781682 7.580998e-23 1.313559e-18 2.919021e-20
46 7996219 8003758 NM_000430 PAFAH1B1 link to infopage -0.781477 7.911063e-23 1.370750e-18 2.979891e-20
47 7996219 8001014 NM_173502 PRSS36 link to infopage 0.781435 7.980597e-23 1.382798e-18 2.942123e-20
48 7996219 8071444 NM_144704 AIFM3 link to infopage 0.780750 9.199915e-23 1.594069e-18 3.320978e-20
49 7996219 8108134 NM_014829 DDX46 link to infopage -0.780697 9.300678e-23 1.611529e-18 3.288834e-20
50 7996219 7999326 NM_003470 USP7 link to infopage -0.780684 9.326374e-23 1.615981e-18 3.231961e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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