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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4775 8016452 NM_024015 HOXB4 link to infopage homeobox B4

Fetching correlation data, please wait...
Getting list of correlations for id 4775.
Getting list of p-values for id 4775.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8016452 8149612 NM_021020 LZTS1 link to infopage 0.685600 7.112995e-16 1.232469e-11 1.232469e-11
2 8016452 8165171 NM_019892 INPP5E link to infopage 0.671012 4.798029e-15 8.313545e-11 4.156773e-11
3 8016452 7944530 NM_178507 OAF link to infopage 0.665571 9.514562e-15 1.648588e-10 5.495294e-11
4 8016452 7897280 NM_001024598 HES3 link to infopage 0.661953 1.488175e-14 2.578562e-10 6.446404e-11
5 8016452 7985310 NM_021214 FAM108C1 link to infopage 0.660512 1.775436e-14 3.076298e-10 6.152596e-11
6 8016452 8094968 NM_175619 ZAR1 link to infopage 0.658413 2.292118e-14 3.971552e-10 6.619254e-11
7 8016452 7941039 NM_003942 RPS6KA4 link to infopage 0.655639 3.202073e-14 5.548231e-10 7.926045e-11
8 8016452 7962240 link to infopage 0.653825 3.977164e-14 6.891232e-10 8.614040e-11
9 8016452 8165430 NM_178448 C9orf140 link to infopage 0.652845 4.468657e-14 7.742842e-10 8.603158e-11
10 8016452 8126301 ENST00000390874 link to infopage 0.652104 4.878710e-14 8.453341e-10 8.453341e-11
11 8016452 7914898 ENST00000312808 link to infopage 0.648279 7.646974e-14 1.324991e-9 1.204537e-10
12 8016452 8099279 NM_001130083 ABLIM2 link to infopage 0.644754 1.150569e-13 1.993590e-9 1.661325e-10
13 8016452 7914003 BC033143 C1orf172 link to infopage 0.643467 1.333889e-13 2.311230e-9 1.777869e-10
14 8016452 8010967 NM_022463 NXN link to infopage 0.643134 1.385736e-13 2.401064e-9 1.715046e-10
15 8016452 7901309 NM_012186 FOXE3 link to infopage 0.641987 1.579580e-13 2.736938e-9 1.824626e-10
16 8016452 8036923 NM_004756 NUMBL link to infopage 0.639165 2.175363e-13 3.769251e-9 2.355782e-10
17 8016452 8117165 NM_003107 SOX4 link to infopage 0.638058 2.464073e-13 4.269500e-9 2.511470e-10
18 8016452 8018993 NM_001082575 HRNBP3 link to infopage 0.637185 2.717449e-13 4.708525e-9 2.615847e-10
19 8016452 8175528 NM_005634 SOX3 link to infopage 0.637061 2.755361e-13 4.774214e-9 2.512744e-10
20 8016452 7908637 NM_005298 GPR25 link to infopage 0.636456 2.948378e-13 5.108655e-9 2.554327e-10
21 8016452 8176109 NM_019848 SLC10A3 link to infopage 0.636422 2.959576e-13 5.128058e-9 2.441932e-10
22 8016452 8017162 NM_016125 RNFT1 link to infopage -0.636387 2.971228e-13 5.148247e-9 2.340112e-10
23 8016452 8073104 NM_004711 SYNGR1 link to infopage 0.635843 3.157072e-13 5.470258e-9 2.378373e-10
24 8016452 8033825 NM_015719 COL5A3 link to infopage 0.634584 3.631258e-13 6.291881e-9 2.621617e-10
25 8016452 7896985 NM_080875 MIB2 link to infopage 0.632976 4.338097e-13 7.516620e-9 3.006648e-10
26 8016452 7941122 NM_013299 SAC3D1 link to infopage 0.632515 4.564250e-13 7.908476e-9 3.041722e-10
27 8016452 7959946 NM_016155 MMP17 link to infopage 0.631757 4.961111e-13 8.596116e-9 3.183747e-10
28 8016452 8141228 NM_001134450 TMEM130 link to infopage 0.629886 6.088399e-13 1.054937e-8 3.767632e-10
29 8016452 8175977 NM_001569 IRAK1 link to infopage 0.629611 6.273633e-13 1.087032e-8 3.748387e-10
30 8016452 8138757 NM_018951 HOXA10 link to infopage 0.628813 6.842377e-13 1.185579e-8 3.951929e-10
31 8016452 8159815 NM_001145355 CBWD1 link to infopage -0.628152 7.351624e-13 1.273816e-8 4.109083e-10
32 8016452 8029521 NM_001128917 TOMM40 link to infopage 0.628031 7.448538e-13 1.290608e-8 4.033151e-10
33 8016452 7997158 NM_001017967 MARVELD3 link to infopage 0.627575 7.825545e-13 1.355932e-8 4.108885e-10
34 8016452 7962703 NM_001844 COL2A1 link to infopage 0.626888 8.428675e-13 1.460436e-8 4.295401e-10
35 8016452 8032070 ENST00000358041 link to infopage 0.626724 8.578722e-13 1.486435e-8 4.246957e-10
36 8016452 8048205 NM_000597 IGFBP2 link to infopage 0.626724 8.578908e-13 1.486467e-8 4.129076e-10
37 8016452 7928645 NM_001099338 FAM22A link to infopage 0.626565 8.727037e-13 1.512134e-8 4.086848e-10
38 8016452 8000616 NM_024816 RABEP2 link to infopage 0.626541 8.750033e-13 1.516118e-8 3.989785e-10
39 8016452 8031550 NM_001130071 EPN1 link to infopage 0.626481 8.806883e-13 1.525969e-8 3.912740e-10
40 8016452 8112740 NM_032367 ZBED3 link to infopage 0.624799 1.054975e-12 1.827955e-8 4.569888e-10
41 8016452 8074565 NM_033257 DGCR6L link to infopage 0.623235 1.246788e-12 2.160309e-8 5.269048e-10
42 8016452 7948643 NM_013401 RAB3IL1 link to infopage 0.623133 1.260493e-12 2.184057e-8 5.200135e-10
43 8016452 7938738 NM_004976 KCNC1 link to infopage 0.622861 1.297497e-12 2.248172e-8 5.228308e-10
44 8016452 8127692 NM_000863 HTR1B link to infopage 0.622515 1.345988e-12 2.332194e-8 5.300441e-10
45 8016452 8000690 ENST00000458775 link to infopage -0.622410 1.361104e-12 2.358385e-8 5.240857e-10
46 8016452 8000649 ENST00000458775 link to infopage -0.622410 1.361104e-12 2.358385e-8 5.126925e-10
47 8016452 8165622 NM_138462 ZMYND19 link to infopage 0.622385 1.364792e-12 2.364775e-8 5.031437e-10
48 8016452 7924842 BC002843 C1orf35 link to infopage 0.622218 1.389167e-12 2.407009e-8 5.014602e-10
49 8016452 8048541 NM_001927 DES link to infopage 0.622200 1.391790e-12 2.411554e-8 4.921539e-10
50 8016452 8164328 NM_173492 PIP5KL1 link to infopage 0.622079 1.409818e-12 2.442792e-8 4.885585e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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