[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2060	8046560	NM_006898	HOXD3		homeobox D3

Fetching correlation data, please wait...
Getting list of correlations for id 2060.
Getting list of p-values for id 2060.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.147 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8046560	8151609	NM_172239	REXO1L1	0.746615	6.109752e-20	1.058637e-15	1.058637e-15
2	8046560	7927307	NM_001630	ANXA8L2	0.728082	1.370300e-18	2.374319e-14	1.187159e-14
3	8046560	8131056	NM_017781	CYP2W1	0.723462	2.860344e-18	4.956118e-14	1.652039e-14
4	8046560	8137330	ENST00000356058		0.723391	2.892549e-18	5.011919e-14	1.252980e-14
5	8046560	7931519	NM_152643	KNDC1	0.723071	3.042154e-18	5.271141e-14	1.054228e-14
6	8046560	7927367	NM_001040084	ANXA8	0.722947	3.102152e-18	5.375099e-14	8.958498e-15
7	8046560	8054766	NM_001097	ACR	0.722354	3.405260e-18	5.900294e-14	8.428992e-15
8	8046560	7991459	NM_020211	RGMA	0.718898	5.832745e-18	1.010640e-13	1.263300e-14
9	8046560	8038150	NM_182574	MAMSTR	0.715435	9.923191e-18	1.719391e-13	1.910435e-14
10	8046560	8060604	NM_000915	OXT	0.715338	1.007051e-17	1.744917e-13	1.744917e-14
11	8046560	8110821	NM_001044	SLC6A3	0.715032	1.055135e-17	1.828233e-13	1.662030e-14
12	8046560	8035648	NM_001001524	TM6SF2	0.714936	1.070681e-17	1.855169e-13	1.545974e-14
13	8046560	8036072	NM_207392	KRTDAP	0.714750	1.101238e-17	1.908115e-13	1.467781e-14
14	8046560	8151125	ENST00000340798		0.712873	1.462777e-17	2.534553e-13	1.810395e-14
15	8046560	7906307	NM_018240	KIRREL	0.712539	1.538170e-17	2.665187e-13	1.776791e-14
16	8046560	8087116	NM_001008269	TMEM89	0.710300	2.150873e-17	3.726818e-13	2.329261e-14
17	8046560	8013112	NM_016084	RASD1	0.708820	2.679775e-17	4.643246e-13	2.731321e-14
18	8046560	7996516	NM_015432	PLEKHG4	0.708108	2.977142e-17	5.158495e-13	2.865830e-14
19	8046560	7944882	NM_022370	ROBO3	0.707814	3.109145e-17	5.387215e-13	2.835376e-14
20	8046560	7933312	NM_001098845	ANXA8L1	0.707772	3.128528e-17	5.420800e-13	2.710400e-14
21	8046560	8014706	NM_007144	PCGF2	0.707466	3.272804e-17	5.670788e-13	2.700375e-14
22	8046560	8074131	NM_001080420	SHANK3	0.704799	4.836831e-17	8.380777e-13	3.809444e-14
23	8046560	7955305	NM_001652	AQP6	0.700732	8.701141e-17	1.507647e-12	6.554985e-14
24	8046560	7916654	NM_181712	KANK4	0.699325	1.063629e-16	1.842951e-12	7.678961e-14
25	8046560	7997533	NM_013370	OSGIN1	0.698270	1.235738e-16	2.141163e-12	8.564653e-14
26	8046560	8125234	NM_019105	TNXB	0.697690	1.341338e-16	2.324136e-12	8.938986e-14
27	8046560	8028407	NM_000540	RYR1	0.696404	1.608185e-16	2.786502e-12	1.032038e-13
28	8046560	7998015	NM_032451	SPIRE2	0.696009	1.700040e-16	2.945660e-12	1.052021e-13
29	8046560	8035201	NM_015692	CPAMD8	0.695581	1.805152e-16	3.127787e-12	1.078547e-13
30	8046560	7905490	NM_178434	LCE3C	0.694622	2.064475e-16	3.577116e-12	1.192372e-13
31	8046560	8086391	NM_000729	CCK	0.694445	2.116128e-16	3.666616e-12	1.182779e-13
32	8046560	7976755	NM_207117	SLC25A47	0.693557	2.394570e-16	4.149071e-12	1.296585e-13
33	8046560	8172197	NR_002191	PPP1R2P9	0.692659	2.712424e-16	4.699816e-12	1.424187e-13
34	8046560	7938730	NM_002478	MYOD1	0.692604	2.733295e-16	4.735980e-12	1.392935e-13
35	8046560	7942693	NM_138706	B3GNT6	0.692527	2.762585e-16	4.786731e-12	1.367637e-13
36	8046560	7896865	NM_153254	TTLL10	0.692493	2.775475e-16	4.809066e-12	1.335852e-13
37	8046560	8034643	NM_001127221	CACNA1A	0.692477	2.781711e-16	4.819871e-12	1.302668e-13
38	8046560	8004763	NM_000180	GUCY2D	0.692455	2.790069e-16	4.834353e-12	1.272198e-13
39	8046560	7909064	NM_005076	CNTN2	0.691998	2.972111e-16	5.149777e-12	1.320456e-13
40	8046560	8060094	NM_148961	OTOS	0.691123	3.353223e-16	5.810129e-12	1.452532e-13
41	8046560	8163599	NM_015404	DFNB31	0.690161	3.827137e-16	6.631280e-12	1.617385e-13
42	8046560	7940002	NM_001005210	LRRC55	0.690145	3.835626e-16	6.645989e-12	1.582378e-13
43	8046560	7896779	NM_198317	KLHL17	0.688828	4.592935e-16	7.958179e-12	1.850739e-13
44	8046560	7911941	NM_015557	CHD5	0.688542	4.775393e-16	8.274324e-12	1.880528e-13
45	8046560	8004842	NM_173728	ARHGEF15	0.688461	4.828203e-16	8.365827e-12	1.859073e-13
46	8046560	8076882	NM_001080447	TTLL8	0.688424	4.852771e-16	8.408396e-12	1.827912e-13
47	8046560	8037513	NM_138568	EXOC3L2	0.688255	4.965863e-16	8.604350e-12	1.830713e-13
48	8046560	8151613	AF495523	REXO1L1	0.688041	5.112278e-16	8.858043e-12	1.845426e-13
49	8046560	8151605	AF495523	REXO1L1	0.688041	5.112278e-16	8.858043e-12	1.807764e-13
50	8046560	8151617	AF495523	REXO1L1	0.688041	5.112278e-16	8.858043e-12	1.771609e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation