[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6472	7909064	NM_005076	CNTN2		contactin 2 (axonal)

Fetching correlation data, please wait...
Getting list of correlations for id 6472.
Getting list of p-values for id 6472.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.145 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7909064	8137330	ENST00000356058		0.826957	1.656106e-27	2.869536e-23	2.869536e-23
2	7909064	8008201	NM_002507	NGFR	0.818446	1.558774e-26	2.700888e-22	1.350444e-22
3	7909064	8044927	NM_002193	INHBB	0.812358	7.222888e-26	1.251510e-21	4.171699e-22
4	7909064	8074131	NM_001080420	SHANK3	0.808034	2.075153e-25	3.595618e-21	8.989045e-22
5	7909064	8040479	NM_182828	GDF7	0.802506	7.698444e-25	1.333909e-20	2.667819e-21
6	7909064	8151609	NM_172239	REXO1L1	0.802066	8.531434e-25	1.478242e-20	2.463736e-21
7	7909064	7929840	NM_003987	PAX2	0.797529	2.420371e-24	4.193776e-20	5.991109e-21
8	7909064	7955112	NM_181788	H1FNT	0.794881	4.394339e-24	7.614071e-20	9.517589e-21
9	7909064	7927099	NR_026827	LOC84856	0.793678	5.746070e-24	9.956215e-20	1.106246e-20
10	7909064	8039605	NM_001005850	ZNF835	0.792330	7.742728e-24	1.341582e-19	1.341582e-20
11	7909064	8131087	NM_001080461	UNCX	0.790917	1.056076e-23	1.829863e-19	1.663512e-20
12	7909064	8017776	NM_014877	HELZ	-0.790831	1.076092e-23	1.864545e-19	1.553788e-20
13	7909064	8060604	NM_000915	OXT	0.789507	1.435969e-23	2.488104e-19	1.913926e-20
14	7909064	8075126	NM_002430	MN1	0.786601	2.685512e-23	4.653186e-19	3.323704e-20
15	7909064	8046276	NM_001003845	SP5	0.786405	2.800562e-23	4.852534e-19	3.235022e-20
16	7909064	8073449	NM_014460	CSDC2	0.786209	2.919724e-23	5.059006e-19	3.161878e-20
17	7909064	7935983	NM_005029	PITX3	0.785541	3.366202e-23	5.832618e-19	3.430952e-20
18	7909064	8153876	NM_025251	ARHGAP39	0.784602	4.107704e-23	7.117418e-19	3.954121e-20
19	7909064	7977693	NM_020920	CHD8	-0.784293	4.384601e-23	7.597197e-19	3.998525e-20
20	7909064	7937612	NM_002458	MUC5B	0.784071	4.595273e-23	7.962230e-19	3.981115e-20
21	7909064	8028407	NM_000540	RYR1	0.784004	4.660581e-23	8.075388e-19	3.845423e-20
22	7909064	7927307	NM_001630	ANXA8L2	0.783897	4.766295e-23	8.258559e-19	3.753890e-20
23	7909064	8013112	NM_016084	RASD1	0.783777	4.889124e-23	8.471385e-19	3.683211e-20
24	7909064	8036883	NM_144685	HIPK4	0.783714	4.954106e-23	8.583980e-19	3.576658e-20
25	7909064	8137537	NM_001427	EN2	0.783211	5.506970e-23	9.541928e-19	3.816771e-20
26	7909064	8131056	NM_017781	CYP2W1	0.782625	6.225669e-23	1.078722e-18	4.148929e-20
27	7909064	7947928	NM_031909	C1QTNF4	0.782609	6.246979e-23	1.082414e-18	4.008941e-20
28	7909064	8100902	NM_032217	ANKRD17	-0.782543	6.334334e-23	1.097550e-18	3.919822e-20
29	7909064	8067521	NM_080473	GATA5	0.782245	6.740968e-23	1.168008e-18	4.027612e-20
30	7909064	7999841	NM_015092	SMG1	-0.781860	7.304317e-23	1.265619e-18	4.218730e-20
31	7909064	8062948	NM_014276	RBPJL	0.781682	7.580202e-23	1.313422e-18	4.236844e-20
32	7909064	8005328	NM_016239	MYO15A	0.780852	9.007974e-23	1.560812e-18	4.877536e-20
33	7909064	7946354	NM_002315	LMO1	0.780426	9.838244e-23	1.704673e-18	5.165675e-20
34	7909064	7974771	NM_022495	C14orf135	-0.779774	1.125647e-22	1.950408e-18	5.736495e-20
35	7909064	8087951	NM_018165	PBRM1	-0.778933	1.338278e-22	2.318833e-18	6.625239e-20
36	7909064	8066031	NM_016558	SCAND1	0.778896	1.348344e-22	2.336276e-18	6.489655e-20
37	7909064	8159670	NM_006647	NOXA1	0.778120	1.580602e-22	2.738709e-18	7.401916e-20
38	7909064	7991939	NM_145294	WDR90	0.778068	1.597543e-22	2.768062e-18	7.284374e-20
39	7909064	7984802	NM_001130136	ISLR2	0.777811	1.683669e-22	2.917292e-18	7.480237e-20
40	7909064	7916443	NM_015306	USP24	-0.776995	1.987906e-22	3.444445e-18	8.611112e-20
41	7909064	8006063	NM_152345	ANKRD13B	0.776115	2.376410e-22	4.117606e-18	1.004294e-19
42	7909064	7942693	NM_138706	B3GNT6	0.775885	2.489140e-22	4.312933e-18	1.026889e-19
43	7909064	8039524	NM_152600	ZNF579	0.775553	2.662149e-22	4.612705e-18	1.072722e-19
44	7909064	7927367	NM_001040084	ANXA8	0.775267	2.820170e-22	4.886509e-18	1.110570e-19
45	7909064	8028730	NM_182704	SELV	0.774867	3.056461e-22	5.295930e-18	1.176873e-19
46	7909064	8004842	NM_173728	ARHGEF15	0.774703	3.158679e-22	5.473043e-18	1.189792e-19
47	7909064	8148517	NM_001702	BAI1	0.774652	3.190881e-22	5.528840e-18	1.176349e-19
48	7909064	8163972	NM_001100588	RC3H2	-0.774556	3.253476e-22	5.637297e-18	1.174437e-19
49	7909064	8009382	NM_004459	BPTF	-0.774307	3.419460e-22	5.924899e-18	1.209163e-19
50	7909064	7976669	NM_001127258	HHIPL1	0.773879	3.725784e-22	6.455666e-18	1.291133e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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