[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5695	8146092	NM_002164	IDO1		indoleamine 2,3-dioxygenase 1

Fetching correlation data, please wait...
Getting list of correlations for id 5695.
Getting list of p-values for id 5695.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8146092	8091511	NM_014879	P2RY14	0.683082	9.966621e-16	1.726916e-11	1.726916e-11
2	8146092	8025103	NM_001974	EMR1	0.677852	1.987237e-15	3.443285e-11	1.721642e-11
3	8146092	7983393	NM_003104	SORD	0.603276	9.707096e-12	1.681949e-7	5.606495e-8
4	8146092	7969050	NM_020377	CYSLTR2	0.551207	1.106588e-9	1.917386e-5	4.793464e-6
5	8146092	8085062	NM_000564	IL5RA	0.535503	3.958003e-9	6.858032e-5	1.371606e-5
6	8146092	8033332	NR_024075	EMR4P	0.529273	6.446496e-9	1.116984e-4	1.861641e-5
7	8146092	8112807	NM_000046	ARSB	0.524316	9.436719e-9	1.635100e-4	2.335858e-5
8	8146092	7917954	NM_001013660	FRRS1	0.519661	1.342337e-8	2.325867e-4	2.907334e-5
9	8146092	7960874	NM_004054	C3AR1	0.516718	1.672810e-8	2.898479e-4	3.220532e-5
10	8146092	8046124	NM_005771	DHRS9	0.501872	4.920359e-8	8.525506e-4	8.525506e-5
11	8146092	7973618	NM_006084	IRF9	0.500688	5.350837e-8	9.271396e-4	8.428542e-5
12	8146092	8157582	NM_000177	GSN	0.497046	6.911307e-8	1.197522e-3	9.979352e-5
13	8146092	8036755	NM_001828	CLC	0.493823	8.647277e-8	1.498314e-3	1.152549e-4
14	8146092	7958828	NM_001143906	TRAFD1	0.493681	8.732243e-8	1.513036e-3	1.080740e-4
15	8146092	7902850	NM_198460	GBP6	0.486886	1.389685e-7	2.407908e-3	1.605272e-4
16	8146092	7940762	NM_001142535	LGALS12	0.485757	1.499734e-7	2.598589e-3	1.624118e-4
17	8146092	8044021	NM_016232	IL1RL1	0.485375	1.538869e-7	2.666398e-3	1.568469e-4
18	8146092	8023043	NM_024430	PSTPIP2	0.485057	1.572096e-7	2.723970e-3	1.513317e-4
19	8146092	7917516	NM_002053	GBP1	0.482119	1.913764e-7	3.315979e-3	1.745252e-4
20	8146092	7995697	NM_017839	LPCAT2	0.479804	2.231702e-7	3.866870e-3	1.933435e-4
21	8146092	7981290	NM_004184	WARS	0.478116	2.494494e-7	4.322210e-3	2.058195e-4
22	8146092	8042576	NM_017567	NAGK	0.476597	2.755965e-7	4.775261e-3	2.170573e-4
23	8146092	8059361	NM_020830	WDFY1	0.475499	2.960970e-7	5.130472e-3	2.230640e-4
24	8146092	7964119	NM_005419	STAT2	0.475044	3.050185e-7	5.285055e-3	2.202106e-4
25	8146092	8002249	NM_018667	SMPD3	0.474480	3.164117e-7	5.482465e-3	2.192986e-4
26	8146092	8057744	NM_007315	STAT1	0.470825	4.007517e-7	6.943824e-3	2.670702e-4
27	8146092	8114010	NM_002198	IRF1	0.462550	6.774234e-7	1.173772e-2	4.347302e-4
28	8146092	8174051	NM_000061	BTK	0.461583	7.196244e-7	1.246893e-2	4.453190e-4
29	8146092	8001373	NM_153337	SNX20	0.460305	7.792367e-7	1.350183e-2	4.655805e-4
30	8146092	8020684	NM_021624	HRH4	0.459987	7.947844e-7	1.377123e-2	4.590410e-4
31	8146092	8052622	NR_003131	LOC388955	0.458033	8.969843e-7	1.554205e-2	5.013564e-4
32	8146092	8011680	NM_001140	ALOX15	0.457839	9.077703e-7	1.572894e-2	4.915292e-4
33	8146092	7918323	NM_002959	SORT1	0.455392	1.055096e-6	1.828165e-2	5.539894e-4
34	8146092	8026971	NM_006332	IFI30	0.454363	1.123509e-6	1.946703e-2	5.725598e-4
35	8146092	7935058	NM_013451	MYOF	0.452065	1.291935e-6	2.238536e-2	6.395816e-4
36	8146092	8125512	NM_000593	TAP1	0.451951	1.300876e-6	2.254028e-2	6.261188e-4
37	8146092	8178867	NM_000593	TAP1	0.451951	1.300876e-6	2.254028e-2	6.091967e-4
38	8146092	8180061	NM_000593	TAP1	0.451951	1.300876e-6	2.254028e-2	5.931652e-4
39	8146092	7945962	NM_003141	TRIM21	0.451694	1.321298e-6	2.289413e-2	5.870289e-4
40	8146092	7935337	NM_152309	PIK3AP1	0.448035	1.646513e-6	2.852914e-2	7.132285e-4
41	8146092	8002778	NM_152649	MLKL	0.447892	1.660627e-6	2.877368e-2	7.017971e-4
42	8146092	8130211	NM_182961	SYNE1	0.444955	1.977606e-6	3.426598e-2	8.158567e-4
43	8146092	7939298	NM_001752	CAT	0.443759	2.122471e-6	3.677605e-2	8.552570e-4
44	8146092	7934898	NM_144590	ANKRD22	0.440919	2.507616e-6	4.344945e-2	9.874876e-4
45	8146092	8011599	NM_016376	ANKFY1	0.440266	2.605134e-6	4.513916e-2	1.003092e-3
46	8146092	8149638	NM_003974	DOK2	0.439844	2.669962e-6	4.626243e-2	1.005705e-3
47	8146092	8007446	NM_005533	IFI35	0.438309	2.919138e-6	5.057990e-2	1.076168e-3
48	8146092	7953715	NR_024260	NECAP1	0.438184	2.940352e-6	5.094747e-2	1.061406e-3
49	8146092	7917576	NM_052942	GBP5	0.437187	3.114820e-6	5.397048e-2	1.101438e-3
50	8146092	7966829	NM_018639	WSB2	0.436258	3.286308e-6	5.694186e-2	1.138837e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation