[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4994	7955305	NM_001652	AQP6		aquaporin 6, kidney specific

Fetching correlation data, please wait...
Getting list of correlations for id 4994.
Getting list of p-values for id 4994.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7955305	7937560	NM_002457	MUC2	0.847770	3.942487e-30	6.831148e-26	6.831148e-26
2	7955305	8028407	NM_000540	RYR1	0.837960	7.556473e-29	1.309310e-24	6.546550e-25
3	7955305	8151609	NM_172239	REXO1L1	0.835065	1.740190e-28	3.015226e-24	1.005075e-24
4	7955305	7955184	NM_006262	PRPH	0.831892	4.263487e-28	7.387344e-24	1.846836e-24
5	7955305	7935983	NM_005029	PITX3	0.824584	3.131542e-27	5.426022e-23	1.085204e-23
6	7955305	8131056	NM_017781	CYP2W1	0.824030	3.629115e-27	6.288167e-23	1.048028e-23
7	7955305	8112121	NM_173514	SLC38A9	-0.823493	4.184703e-27	7.250835e-23	1.035834e-23
8	7955305	7987701	NM_016642	SPTBN5	0.822710	5.145550e-27	8.915695e-23	1.114462e-23
9	7955305	8115691	NM_003062	SLIT3	0.821152	7.741847e-27	1.341430e-22	1.490478e-23
10	7955305	8135099	NM_133457	EMID2	0.820558	9.037386e-27	1.565908e-22	1.565908e-23
11	7955305	7940377	NM_017870	TMEM132A	0.819263	1.263530e-26	2.189318e-22	1.990289e-23
12	7955305	8153101	NM_152888	COL22A1	0.818630	1.486904e-26	2.576359e-22	2.146966e-23
13	7955305	7913450	NM_005529	HSPG2	0.818246	1.641047e-26	2.843441e-22	2.187263e-23
14	7955305	7977418	NM_001134875	C14orf80	0.815914	2.970003e-26	5.146124e-22	3.675803e-23
15	7955305	8014269	NM_139285	GAS2L2	0.815652	3.172798e-26	5.497507e-22	3.665005e-23
16	7955305	7946860	NM_000352	ABCC8	0.812964	6.216204e-26	1.077082e-21	6.731761e-23
17	7955305	8137783	NM_001097620	TMEM184A	0.812709	6.620583e-26	1.147148e-21	6.747932e-23
18	7955305	7945688	NR_003512	INS-IGF2	0.812509	6.957936e-26	1.205602e-21	6.697787e-23
19	7955305	7931519	NM_152643	KNDC1	0.811743	8.405852e-26	1.456482e-21	7.665694e-23
20	7955305	7914667	NM_052896	CSMD2	0.811105	9.833921e-26	1.703923e-21	8.519617e-23
21	7955305	8153322	NM_015193	ARC	0.811104	9.835265e-26	1.704156e-21	8.115030e-23
22	7955305	8125568	NM_080680	COL11A2	0.810935	1.025130e-25	1.776242e-21	8.073829e-23
23	7955305	8034643	NM_001127221	CACNA1A	0.810724	1.079618e-25	1.870655e-21	8.133281e-23
24	7955305	8004842	NM_173728	ARHGEF15	0.810373	1.176403e-25	2.038353e-21	8.493136e-23
25	7955305	7980152	NM_000428	LTBP2	0.810293	1.199498e-25	2.078370e-21	8.313479e-23
26	7955305	8024768	NM_133475	ANKRD24	0.809491	1.458345e-25	2.526874e-21	9.718747e-23
27	7955305	7906307	NM_018240	KIRREL	0.809149	1.584730e-25	2.745861e-21	1.016986e-22
28	7955305	8083887	NM_005602	CLDN11	0.808535	1.838844e-25	3.186166e-21	1.137916e-22
29	7955305	7989887	NM_032445	MEGF11	0.808454	1.875317e-25	3.249362e-21	1.120470e-22
30	7955305	7942123	NM_053056	CCND1	0.808441	1.881250e-25	3.259642e-21	1.086547e-22
31	7955305	7936762	NM_001001976	ATE1	-0.807477	2.372736e-25	4.111239e-21	1.326206e-22
32	7955305	7923360	NM_003281	TNNI1	0.807327	2.459691e-25	4.261907e-21	1.331846e-22
33	7955305	8032699	NM_015174	ZFR2	0.806947	2.694371e-25	4.668537e-21	1.414708e-22
34	7955305	8125234	NM_019105	TNXB	0.806545	2.966375e-25	5.139838e-21	1.511717e-22
35	7955305	8075200	NM_012265	RHBDD3	0.806118	3.284674e-25	5.691355e-21	1.626101e-22
36	7955305	8067409	NM_005560	LAMA5	0.805846	3.504300e-25	6.071900e-21	1.686639e-22
37	7955305	8174389	NM_033641	COL4A6	0.805348	3.944138e-25	6.834007e-21	1.847029e-22
38	7955305	7967641	NM_133448	TMEM132D	0.803991	5.435747e-25	9.418519e-21	2.478558e-22
39	7955305	8110688	NM_004174	SLC9A3	0.803315	6.371681e-25	1.104021e-20	2.830824e-22
40	7955305	8163548	NM_138424	KIF12	0.802922	6.985837e-25	1.210436e-20	3.026090e-22
41	7955305	8161615	NM_002732	PRKACG	0.802780	7.222044e-25	1.251364e-20	3.052106e-22
42	7955305	7936882	NM_001146340	NKX1-2	0.802694	7.368881e-25	1.276806e-20	3.040014e-22
43	7955305	8107897	NM_003687	PDLIM4	0.801403	9.950579e-25	1.724137e-20	4.009620e-22
44	7955305	7991296	NM_198525	KIF7	0.801045	1.081209e-24	1.873411e-20	4.257753e-22
45	7955305	7952290	NM_012101	TRIM29	0.800607	1.196471e-24	2.073125e-20	4.606945e-22
46	7955305	8156415	NM_006648	WNK2	0.799107	1.689123e-24	2.926743e-20	6.362485e-22
47	7955305	8090044	NM_001031702	SEMA5B	0.798863	1.786261e-24	3.095055e-20	6.585223e-22
48	7955305	8027920	NM_014209	ETV2	0.798409	1.981275e-24	3.432955e-20	7.151989e-22
49	7955305	8049942	NM_080741	NEU4	0.797922	2.213749e-24	3.835764e-20	7.828089e-22
50	7955305	8074131	NM_001080420	SHANK3	0.797884	2.232616e-24	3.868453e-20	7.736906e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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